Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002673 (moaC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002673 showshow history
Names
moaC JW0766 ECK0772 b0783
Product
cyclic pyranopterin monophosphate synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 818570 819055 486 162
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000320
EnteroFam0002673: Trusted threshold=447.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002820 (IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain) Apr 2008
Automated Process Approved IPR012087 (IPR012087 (DEPRECATED) Molybdenum cofactor precursor Z biosynthesis MoaC) Apr 2008
Automated Process Approved IPR023045 (IPR023045 Molybdenum cofactor biosynthesis C) Jul 2018
Automated Process Approved IPR036522 (IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily) Jul 2018
Automated Process Approved PF01967 (PF01967 MoaC family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006777 Mo-molybdopterin cofactor biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002820
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006777 Mo-molybdopterin cofactor biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name moaC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0766 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0772 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0783 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product cyclic pyranopterin monophosphate synthase Published Annotation - EcoCyc Accession Number: EG11666
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name molybdopterin biosynthesis protein C Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name molybdopterin biosynthesis, protein C Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002673: Trusted threshold=447.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000320
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR012087 (DEPRECATED) Molybdenum cofactor precursor Z biosynthesis MoaC Protein Sequence Similarity - InterPro Domain: IPR012087
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036522
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain Protein Sequence Similarity - InterPro Domain: IPR002820
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01967 MoaC family Protein Sequence Similarity - PFAM Model Name: PF01967
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR023045 Molybdenum cofactor biosynthesis C Protein Sequence Similarity - InterPro Domain: IPR023045
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 1.5.3.4 (metabolism; building block biosynthesis; cofactor, small molecule carrier; molybdenum) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A738 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A738 Published Annotation - Swiss-Prot Accession Number: P0A738 Jan 2006
Automated Process Approved db xref GeneID:945397 Published Annotation - Entrez Gene Database ID: 945397
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1787001 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002673 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11666 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Molybdopterin Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0006777 - Mo-molybdopterin cofactor biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73870.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006777 Mo-molybdopterin cofactor biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002820
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006777 Mo-molybdopterin cofactor biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000320 moaC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000605 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000732 moaC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000997 moaC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001148 moaC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000452 moaC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001284 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002665 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001337 moaC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002913 moaC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001611 moaC CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002130 moaC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007407 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020230 moaC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001604 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001795 moaC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299932 moaC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001363 moaC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002326 moaC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000103 moaC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007610 moaC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000804 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005728 moaC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000688 moaC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003584 moaC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008768 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007824 moaC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009841 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076956 moaC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000781 moaC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001007 moaC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007849 moaC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008258 moaC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000777 moaC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005292 moaC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001990 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009633 moaC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008682 moaC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005949 moaC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010113 moaC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005771 moaC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009806 moaC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009511 moaC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009048 moaC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006718 moaC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009855 moaC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007650 moaC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007310 moaC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024825 moaC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009832 moaC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005516 moaC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001057 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000751 moaC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000790 moaC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001077 moaC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001037 moaC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000930 moaC CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000865 moaC CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174951 moaC CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000861 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000805 moaC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130774 moaC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005516 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000785 moaC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000846 moaC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003430 moaC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000814 moaC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003701 moaC CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007256 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000519 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000696 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000562 moaC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003648 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001276 moaC CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002998 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008932 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002944 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287525 moaC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004365 moaC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063088 moaC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001670 moaC CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001921 moaC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004402 moaC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006290 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140185 moaC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001276 moaC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005017 moaC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002231 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000957 moaC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005172 moaC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002541 moaC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002462 moaC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008089 moaC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005295 moaC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004652 moaC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007253 moaC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005214 moaC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004422 moaC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005237 moaC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007762 moaC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001960 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001948 moaC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002725 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005524 moaC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005833 moaC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005042 moaC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006065 moaC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106938 moaC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083797 moaC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000934 moaC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092971 moaC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008637 moaC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006408 moaC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006302 moaC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004529 moaC CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268103 moaC CDS
Person Approved Go view Shigella boydii 227 ADV-0000731 moaC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007980 moaC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005627 moaC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000928 moaC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071775 moaC CDS
Person Approved Go view Shigella flexneri 301 ABT-0087090 moaC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000809 moaC CDS
Person Approved Go view Shigella sonnei 046 ADD-0000822 moaC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001094 VC1026 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002570 moaC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002393 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008364 chlA3 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002318 moaC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003409 moaC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002885 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236588 moaC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005545 moaC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001297 moaC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005225 moaC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002207 moaC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119053 moaC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008065 moaC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004782 moaC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001942 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007673 moaC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005360 moaC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032768 moaC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005476 moaC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003416 moaC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003049 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006324 moaC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006825 moaC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001259 moaC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001501 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003471 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010502 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004609 moaC CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0002673 moaC lambda repressor assay Doodle - bnumber: b0783 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20237mutantTn5 InsertionRequest the StrainABE-0002673moaCmoaC::Tn5KAN-2 at position 387 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 813570 to 824055
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002658uvrBCDSforward813526815547Upstream
ABE-0285400repeat_regionforward815585815681Upstream
ABE-0002661ybhKCDScomplement815739816647Upstream
ABE-0002669moaACDSforward817044818033Upstream
ABE-0002671moaBCDSforward818055818567Upstream
ABE-0002673moaCCDSforward818570819055Matches
ABE-0002675moaDCDSforward819048819293Overlaps Downstream
ABE-0002678moaECDSforward819295819747Downstream
ABE-0285401repeat_regionforward819758819784Downstream
ABE-0002685ybhLCDSforward819884820588Downstream
ABE-0002688ybhMCDSforward820793821506Downstream
ABE-0002690ybhNCDScomplement821542822498Downstream
ABE-0002692clsBCDScomplement822498823739Downstream
ABE-0002696ybhPCDScomplement823736824497Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.