Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002678 (moaE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002678 showshow history
Names
moaE JW0768 ECK0774 b0785
Product
molybdopterin synthase catalytic subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 819295 819747 453 151
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000322
EnteroFam0002678: Trusted threshold=400.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR003448 (IPR003448 Molybdopterin biosynthesis MoaE) Apr 2008
Automated Process Approved IPR036563 (IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily) Jul 2018
Automated Process Approved PF02391 (PF02391 MoaE protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006777 Mo-molybdopterin cofactor biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006777 Mo-molybdopterin cofactor biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003448
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name moaE Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Person Approved synonym ECK0774 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0768 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0785 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product molybdopterin synthase catalytic subunit Published Annotation - EcoCyc Accession Number: EG11598
Reference: Escherichia coli K-12 MG1655
Oct 2021
Person Approved alternate product name molybdopterin synthase, large subunit Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name molybdopterin converting factor, subunit 2 Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002678: Trusted threshold=400.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000322
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family IPR003448 Molybdopterin biosynthesis MoaE Protein Sequence Similarity - InterPro Domain: IPR003448
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF02391 MoaE protein Protein Sequence Similarity - PFAM Model Name: PF02391
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily Protein Sequence Similarity - InterPro Domain: IPR036563
Reference: Escherichia coli K-12 MG1655
Jul 2018
Other
Person Uncurated MultiFun 1.5.3.4 (metabolism; building block biosynthesis; cofactor, small molecule carrier; molybdenum) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG11598 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1787003 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:945399 Published Annotation - Entrez Gene Database ID: 945399
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved db xref UniProtKB:P30749 Published Annotation - Swiss-Prot Accession Number: P30749 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P30749 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0002678 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Molybdopterin Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note molybdopterin converting factor, subunit 2; GO_process: GO:0006777 - Mo-molybdopterin cofactor biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC73872.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006777 Mo-molybdopterin cofactor biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003448
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Approved GO biological process GO:0006777 Mo-molybdopterin cofactor biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000322 moaE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000603 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000860 moaE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001136 moaE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001150 moaE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000544 moaE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001286 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002663 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001339 moaE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002911 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001613 moaE CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002132 moaE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007405 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020232 moaE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001606 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001797 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299936 moaE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001365 moaE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002324 moaE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000101 moaE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007612 moaE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000806 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005726 moaE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000689 moaE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003582 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008766 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007822 moaE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009843 MoaE CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076958 moaE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000783 moaE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001009 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007847 moaE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008256 moaE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000779 moaE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005294 moaE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001992 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009635 moaE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008684 moaE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005951 moaE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010115 moaE CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005773 moaE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009804 moaE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009513 moaE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009050 moaE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006720 moaE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009853 moaE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007648 moaE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007312 moaE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024827 moaE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009834 moaE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005518 moaE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001059 moaE CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000753 moaE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000792 moaE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001075 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001039 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000928 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000867 moaE CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174953 moaE CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000863 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000807 moaE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130776 moaE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005518 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000787 moaE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000848 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003428 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000816 moaE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003703 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007254 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000521 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000698 moaE CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000564 moaE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003646 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001278 moaE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002996 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008934 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002946 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287523 moaE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004367 moaE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063086 moaE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001656 moaE CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001919 moaE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004404 moaE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006292 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140188 moaE CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001278 moaE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005019 moaE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002229 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000959 moaE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005174 moaE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002545 moaE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002466 moaE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008087 moaE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005297 moaE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004654 moaE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007255 moaE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005216 moaE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004424 moaE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005239 moaE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007764 moaE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001958 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001946 moaE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002723 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005526 moaE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005831 moaE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005044 moaE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006067 moaE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106941 moaE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083795 moaE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000936 moaE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092977 moaE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008635 moaE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006406 moaE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006304 moaE CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004527 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268101 moaE CDS
Person Approved Go view Shigella boydii 227 ADV-0000733 moaE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007978 moaE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005629 moaE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000926 moaE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071777 moaE CDS
Person Approved Go view Shigella flexneri 301 ABT-0087092 moaE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000811 moaE CDS
Person Approved Go view Shigella sonnei 046 ADD-0000824 moaE CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001096 VC1028 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002572 moaE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002391 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008360 chlA5 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002316 moaE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003411 moaE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002883 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236585 moaE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005547 moaE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001299 moaE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005227 moaE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002205 moaE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119056 moaE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008067 moaE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004780 moaE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001944 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007675 moaE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005358 moaE CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032766 moaE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005474 moaE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003414 moaE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003047 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006322 moaE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006823 moaE CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001261 moaE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001503 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003469 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010512 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004607 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 814295 to 824747
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002658uvrBCDSforward813526815547Upstream
ABE-0285400repeat_regionforward815585815681Upstream
ABE-0002661ybhKCDScomplement815739816647Upstream
ABE-0002669moaACDSforward817044818033Upstream
ABE-0002671moaBCDSforward818055818567Upstream
ABE-0002673moaCCDSforward818570819055Upstream
ABE-0002675moaDCDSforward819048819293Upstream
ABE-0002678moaECDSforward819295819747Matches
ABE-0285401repeat_regionforward819758819784Downstream
ABE-0002685ybhLCDSforward819884820588Downstream
ABE-0002688ybhMCDSforward820793821506Downstream
ABE-0002690ybhNCDScomplement821542822498Downstream
ABE-0002692clsBCDScomplement822498823739Downstream
ABE-0002696ybhPCDScomplement823736824497Downstream
ABE-0002699ybhQCDSforward824630825040Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.