Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002749 (fiu) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002749 showshow history
Names
fiu ybiL JW0790 ECK0794 b0805
Product
iron catecholate outer membrane transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 839249 841531 2283 761
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012910 (IPR012910 TonB-dependent receptor, plug domain) Apr 2008
Automated Process Approved IPR000531 (IPR000531 TonB-dependent receptor-like, beta-barrel) Apr 2008
Automated Process Approved IPR010916 (IPR010916 TonB box, conserved site) Apr 2008
Automated Process Approved IPR010105 (IPR010105 TonB-dependent siderophore receptor) Apr 2008
Automated Process Approved IPR030148 (IPR030148 Catecholate siderophore receptor Fiu) Jul 2018
Automated Process Approved PF00593 (PF00593 TonB dependent receptor) Jul 2018
Automated Process Approved PF07715 (PF07715 TonB-dependent Receptor Plug Domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015891 siderophore transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006826 iron ion transport Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030148
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0009279 cell outer membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0015343 siderophore transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0038023 signaling receptor activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010105
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004872 (DEPRECATED) receptor activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fiu Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0794 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0790 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ybiL Published Annotation - Swiss-Prot Accession Number: P75780 Jan 2006
Person Approved locus tag b0805 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product iron catecholate outer membrane transporter Published Annotation - EcoCyc Accession Number: G6414
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name putative outer membrane receptor for iron transport Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name predicted iron outer membrane transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name outer membrane porin protein, putative ferrisiderophore receptor Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name catecholate siderophore receptor Fiu Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family PF00593 TonB dependent receptor Protein Sequence Similarity - PFAM Model Name: PF00593
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF07715 TonB-dependent Receptor Plug Domain Protein Sequence Similarity - PFAM Model Name: PF07715
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010105 TonB-dependent siderophore receptor Protein Sequence Similarity - InterPro Domain: IPR010105
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR030148 Catecholate siderophore receptor Fiu Protein Sequence Similarity - InterPro Domain: IPR030148
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010916 TonB box, conserved site Protein Sequence Similarity - InterPro Domain: IPR010916
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012910 TonB-dependent receptor, plug domain Protein Sequence Similarity - InterPro Domain: IPR012910
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000531 TonB-dependent receptor-like, beta-barrel Protein Sequence Similarity - InterPro Domain: IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 7.4 (location of gene products; outer membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.5.7 (cell processes; adaptation to stress; Fe aquisition) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002749 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13317 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P75780 Published Annotation - Swiss-Prot Accession Number: P75780 Jan 2006
Automated Process Approved db xref GeneID:946246 Published Annotation - Entrez Gene Database ID: 946246
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P75780 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787024 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative membrane; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated genetic interaction fiu mutant plus cirA mutant (ASAP:ABE-0007126); a cir fiu double mutant is resistant to catechol-substituted cephalosporins Experimental - PubMed ID: 3072926
Reference: Escherichia coli K-12 		Mar 2007
Person Uncurated genetic interaction fiu mutant plus cirA mutant (ASAP:ABE-0007126); a cir fiu double mutant has reduced ability to uptake ferric chelate Experimental - PubMed ID: 3072926
Reference: Escherichia coli K-12 		Mar 2007
Automated Process Approved note ferric iron outer membrane transporter, TonB-dependent; siderophore receptor for ferri-dihydroxybenzoylserine, ferri-dihydroxybenzoate and other catecholate siderophores; surface receptor for colicins G, H, and E492; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0009279 - cell outer membrane; GO_process: GO:0006826 - iron ion transport Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73892.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Outer Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0015891 siderophore transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006826 iron ion transport Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030148
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO cellular component GO:0009279 cell outer membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004872 (DEPRECATED) receptor activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0038023 signaling receptor activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010105
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0015343 siderophore transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003851 fiu CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004215 fiu CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0008838 fiu CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003407 fiu CDS
Ortholog
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002153 fhuA_3 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007632 fiu CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000826 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005705 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000708 ybiL CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003561 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008742 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007800 fiu CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006283 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076981 fiu CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000803 fiu CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001036 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007827 fiu CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008235 fiu CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000799 fiu CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005319 fiu CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002015 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009656 fiu CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008706 fiu CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005972 fiu CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005794 fiu CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009783 fiu CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008534 fiu CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006742 fiu CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009831 fiu CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007627 fiu CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007333 fiu CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024849 fiu CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008913 fiu CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005539 fiu CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000773 fiu CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000812 fiu CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001053 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001060 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001039 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000890 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174973 pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0000885 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000828 fiu CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130796 fiu CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005541 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000810 ybiL CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001254 ybiL CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003725 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010172 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267557 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005650 CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0000893 CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0071799 fiu pseudogene
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 834249 to 846531
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002732dinGCDSforward833070835220Downstream
ABE-0002734ybiBCDSforward835248836210Downstream
ABE-0285403repeat_regionforward836222836245Downstream
ABE-0002738hcxBCDSforward836351837436Downstream
ABE-0285839zbiJncRNAcomplement837435837531Downstream
ABE-0285754ybiECDSforward837503837562Downstream
ABE-0285404repeat_regionforward837539837661Downstream
ABE-0002741ybiJCDScomplement837665837925Downstream
ABE-0002744ybiICDScomplement838190838456Downstream
ABE-0002746ybiXCDScomplement838530839207Downstream
ABE-0002749fiuCDScomplement839249841531Matches
ABE-0002753mcbACDScomplement841796842056Upstream
ABE-0002757rlmFCDSforward842332843258Upstream
ABE-0002760ybiOCDScomplement843255845480Upstream
ABE-0285405repeat_regionforward845631845729Upstream
ABE-0002764glnQCDScomplement845741846463Upstream
ABE-0002766glnPCDScomplement846460847119Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.