Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002771 (glnH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002771 showshow history
Names
glnH JW0796 ECK0800 b0811
Product
periplasmic-binding component of an ABC superfamily glutamine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 847258 848004 747 249
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000327
EnteroFam0002771: Trusted threshold=695.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001638 (IPR001638 Solute-binding protein family 3/N-terminal domain of MltF) Apr 2008
Automated Process Approved IPR001320 (IPR001320 Ionotropic glutamate receptor) Apr 2008
Automated Process Approved IPR005768 (IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter) Apr 2008
Automated Process Approved PF00497 (PF00497 Bacterial extracellular solute-binding proteins, family 3) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006542 glutamine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001320
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Approved GO molecular function GO:0005234 extracellularly glutamate-gated ion channel activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001320
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004970 ionotropic glutamate receptor activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001320
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name glnH Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0800 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0796 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0811 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product periplasmic-binding component of an ABC superfamily glutamine transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name high-affinity glutamine transport protein (ABC superfamily, peri_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name periplasmic glutamine-binding protein; permease Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name glutamine transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0002771: Trusted threshold=695.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000327
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001320 Ionotropic glutamate receptor Protein Sequence Similarity - InterPro Domain: IPR001320
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter Protein Sequence Similarity - InterPro Domain: IPR005768
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00497 Bacterial extracellular solute-binding proteins, family 3 Protein Sequence Similarity - PFAM Model Name: PF00497
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Protein Sequence Similarity - InterPro Domain: IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.5.1.2 (metabolism; building block biosynthesis; amino acids; glutamine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.p (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, periplasmic binding component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.76 (transport; substrate; glutamine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:944872 Published Annotation - Entrez Gene Database ID: 944872
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AEQ3 Published Annotation - Swiss-Prot Accession Number: P0AEQ3 Jan 2006
Automated Process Approved db xref GI:1787031 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AEQ3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10386 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002771 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note periplasmic glutamine-binding protein; permease; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0006542 - glutamine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73898.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006542 glutamine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Person Uncurated GO cellular component GO:0042597 periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001320
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005234 extracellularly glutamate-gated ion channel activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001320
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004970 ionotropic glutamate receptor activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001320
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000327 glnH CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000599 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001870 glnH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001936 glnH CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000592 glnH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002039 glnH CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000886 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002614 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001394 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002829 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001637 glnH_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002159 glnH CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007361 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018915 glnH CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001642 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001826 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300070 glnH CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001423 glnH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002276 glnH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000076 glnH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007638 glnH CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000832 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005697 glnH CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000718 glnH CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003555 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008733 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007793 glnH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006290 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076987 glnH CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000810 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001043 glnH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007820 glnH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008228 glnH CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000805 glnH CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005326 glnH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002022 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009662 glnH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008712 glnH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005978 glnH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008102 glnH CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005800 glnH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009541 glnH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008540 glnH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006748 glnH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009825 glnH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007621 glnH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007339 glnH CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024855 glnH CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008919 glnH CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005546 glnH CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001177 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000779 glnH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000818 glnH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001047 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001066 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001033 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000896 glnH CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174979 glnH CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000891 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000834 glnH CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130802 glnH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005548 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000816 glnH CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000912 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003366 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000842 glnH CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003731 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007206 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000590 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001175 glnH CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000621 glnH CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003588 CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002939 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009013 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003005 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004426 glnh1 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063041 glnH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001623 glnH CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000721 glnH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004476 glnH CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006375 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005044 glnH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002207 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000984 glnH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005199 glnH CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002616 glnH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008063 glnH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005322 glnH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004678 glnH CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007279 glnH CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005249 glnH CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004457 glnH CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005264 glnH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007796 glnH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001935 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001923 glnH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002685 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005550 glnH CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005797 glnH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005067 glnH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006090 glnH CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106988 glnH CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083772 glnH CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000966 glnH CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093043 glnH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008611 glnH CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006379 glnH CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006329 glnH CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004326 CDS
Person Approved Go view Shigella boydii 227 ADV-0000766 glnH CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007948 glnH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005658 glnH CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000882 glnH CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071809 glnH CDS
Person Approved Go view Shigella flexneri 301 ABT-0087118 glnH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000839 glnH CDS
Person Approved Go view Shigella sonnei 046 ADD-0000852 glnH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001114 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008203 glnH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002267 glnH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001298 glnH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002586 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239859 glnH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005887 glnH CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002422 glnH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007887 glnH CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000952 glnH CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123664 glnH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004657 glnH CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005556 glnH CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003296 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006875 glnH CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008314 glnH CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031365 glnH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008251 glnH CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002540 glnH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002309 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005814 glnH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005461 glnH CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002636 glnH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003155 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001878 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010617 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004585 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 842258 to 853004
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002757rlmFCDSforward842332843258Downstream
ABE-0002760ybiOCDScomplement843255845480Downstream
ABE-0285405repeat_regionforward845631845729Downstream
ABE-0002764glnQCDScomplement845741846463Downstream
ABE-0002766glnPCDScomplement846460847119Downstream
ABE-0002771glnHCDScomplement847258848004Matches
ABE-0002776dpsCDScomplement848408848911Upstream
ABE-0002779rhtACDScomplement849210850097Upstream
ABE-0285813yliMCDSforward850332850397Upstream
ABE-0002784ompXCDSforward850450850965Upstream
ABE-0002786opgECDScomplement851014852597Upstream
ABE-0285318mntSCDScomplement852869852997Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.