Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002807 (ybiV) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002807 showshow history
Names
ybiV supH JW0806 ECK0812 b0822
Product
sugar phosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 859213 860028 816 272
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006379 (IPR006379 HAD-superfamily hydrolase, subfamily IIB) Apr 2008
Automated Process Approved IPR013200 (IPR013200 (DEPRECATED) HAD superfamily hydrolase-like, type 3) Apr 2008
Automated Process Approved IPR000150 (IPR000150 Cof family) Apr 2008
Automated Process Approved IPR036412 (IPR036412 HAD-like superfamily) Jul 2018
Automated Process Approved PF08282 (PF08282 haloacid dehalogenase-like hydrolase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006379
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000150
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006379
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ybiV Published Annotation - Swiss-Prot Accession Number: P75792 Aug 2002
Person Approved synonym JW0806 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym supH Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved synonym ECK0812 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0822 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product sugar phosphatase Published Annotation - EcoCyc Accession Number: G6425
Reference: Escherichia coli K-12 MG1655
Jan 2021
Automated Process Approved alternate product name sugar phosphatase; preference for fructose-1-P, ribose-5-P and glucose-6-P Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved alternate product name predicted hydrolase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name conserved protein, phophatase-like domain Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR006379 HAD-superfamily hydrolase, subfamily IIB Protein Sequence Similarity - InterPro Domain: IPR006379
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR013200 (DEPRECATED) HAD superfamily hydrolase-like, type 3 Protein Sequence Similarity - InterPro Domain: IPR013200
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF08282 haloacid dehalogenase-like hydrolase Protein Sequence Similarity - PFAM Model Name: PF08282
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR036412 HAD-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036412
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR000150 Cof family Protein Sequence Similarity - InterPro Domain: IPR000150
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Approved EC number 3.1.3.23 Published Annotation - Swiss-Prot Accession Number: P75792 Feb 2006
Automated Process Uncurated EC number 3.-.-.- Published Annotation - Database Name: EC2GO: GO:0016787
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG13327 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1787043 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:945432 Published Annotation - Entrez Gene Database ID: 945432
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved db xref UniProtKB:P75792 Published Annotation - Swiss-Prot Accession Number: P75792 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P75792 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0002807 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC73909.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006379
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006379
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000150
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006352 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002701 ybiV CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002846 ybiV CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002662 ybiV CDS
Ortholog
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001651 supH CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002171 supH CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001849 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297135 CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003150 supH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000064 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007650 supH CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000842 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005686 supH CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000727 ybiV CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003545 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008720 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007779 supH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006306 SupH CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076998 ybiV CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000821 supH CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001055 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007808 supH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008216 supH CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000817 ybiV CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005339 supH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002034 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009673 supH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008723 supH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005989 supH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008113 supH CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005811 supH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008944 supH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009553 supH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008551 supH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006759 supH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008898 supH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007610 supH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007350 supH CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024866 ybiV CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008929 ybiV CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005559 supH CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000790 ybiV CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000830 ybiV CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001116 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001079 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001019 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000904 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000846 supH CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130812 ybiV CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005560 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000827 ybiV CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000858 ybiV CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003751 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005061 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002188 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000996 ybiV(1) CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005216 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002657 ybiV(1) CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002575 ybiV(1) CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008048 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005337 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004693 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007294 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005265 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004473 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005280 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007812 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001925 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001913 ybiV(1) CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002669 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005566 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005082 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006105 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107016 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083761 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000985 ybiV(1) CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0093087 ybiV(1) CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008592 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006364 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006345 CDS
Person Approved Go view Shigella boydii 227 ADV-0000776 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007937 supH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005671 supH CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0000859 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071821 CDS
Person Approved Go view Shigella flexneri 301 ABT-0087128 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000849 CDS
Person Approved Go view Shigella sonnei 046 ADD-0000865 ybiV CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010694 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004566 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 854213 to 865028
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002795ybiRCDSforward853647854765Downstream
ABE-0002797ldtBCDScomplement854824855744Downstream
ABE-0002801ybiTCDSforward855963857555Downstream
ABE-0285406repeat_regionforward857616857713Downstream
ABE-0002804ybiUCDScomplement857796859061Downstream
ABE-0002807ybiVCDScomplement859213860028Matches
ABE-0002810ybiWCDScomplement860174862606Upstream
ABE-0002812ybiYCDScomplement862612863511Upstream
ABE-0002818fsaACDSforward863642864304Upstream
ABE-0285407repeat_regionforward864333864370Upstream
ABE-0002820moeBCDScomplement864380865129Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.