Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002818 (fsaA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002818 showshow history
Names
fsaA JW5109 ybiZ ECK0815 mipB fsa b0825
Product
fructose-6-phosphate aldolase 1
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 863642 864304 663 221
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001585 (IPR001585 Transaldolase/Fructose-6-phosphate aldolase) Apr 2008
Automated Process Approved IPR004731 (IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase) Apr 2008
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved PF00923 (PF00923 Transaldolase/Fructose-6-phosphate aldolase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001585
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fsaA Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0815 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ybiZ Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym mipB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW5109 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym fsa Experimental - PubMed ID: 11120740
Reference: Escherichia coli 		Aug 2002
Person Approved locus tag b0825 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product fructose-6-phosphate aldolase 1 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name fructose-6-phosphate aldolase Experimental - PubMed ID: 11120740
Reference: Escherichia coli 		Jan 2006
Protein Family
Automated Process Approved protein family IPR001585 Transaldolase/Fructose-6-phosphate aldolase Protein Sequence Similarity - InterPro Domain: IPR001585
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase Protein Sequence Similarity - InterPro Domain: IPR004731
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00923 Transaldolase/Fructose-6-phosphate aldolase Protein Sequence Similarity - PFAM Model Name: PF00923
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 4.1.2.- Published Annotation - Swiss-Prot Accession Number: P78055 Feb 2006
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13471 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002818 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P78055 Published Annotation - Swiss-Prot Accession Number: P78055 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P78055 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87081788 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945449 Published Annotation - Entrez Gene Database ID: 945449
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved note fructose-6-phosphate aldolase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73912.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001585
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002863 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003000 fsaA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000099 fsaA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0006729 fsaA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003232 fsaA CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003895 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001654 fsaA CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002174 fsaA CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001852 CDS
Automated Process Approved Go view Escherichia albertii TW07627 AFX-0000061 fsaA CDS
Automated Process Approved Go view Escherichia coli 101-1 (EAEC) BAB-0007653 fsaA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000845 CDS
Automated Process Approved Go view Escherichia coli 53638 (EIEC) ADP-0005683 fsaA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000730 CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003542 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008717 CDS
Automated Process Approved Go view Escherichia coli B171 (EPEC) ADN-0007776 fsaA CDS
Automated Process Approved Go view Escherichia coli B7A (ETEC) ADK-0006309 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077001 fsaA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000824 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001058 CDS
Automated Process Approved Go view Escherichia coli E110019 (EPEC) ADM-0007805 fsaA CDS
Automated Process Approved Go view Escherichia coli E22 (EPEC) ADL-0008213 fsaA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000820 fsaA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005342 fsaA CDS
Automated Process Approved Go view Escherichia coli EC4024 (EHEC) BBI-0002038 CDS
Automated Process Approved Go view Escherichia coli EC4042 (EHEC) BBA-0009677 fsaA CDS
Automated Process Approved Go view Escherichia coli EC4045 (EHEC) BBB-0008727 fsaA CDS
Automated Process Approved Go view Escherichia coli EC4076 (EHEC) BAZ-0005993 fsaA CDS
Automated Process Approved Go view Escherichia coli EC4113 (EHEC) BAY-0008116 fsaA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005815 fsaA CDS
Automated Process Approved Go view Escherichia coli EC4196 (EHEC) BAX-0008947 fsaA CDS
Automated Process Approved Go view Escherichia coli EC4206 (EHEC) BAW-0009557 fsaA CDS
Automated Process Approved Go view Escherichia coli EC4401 (EHEC) BAV-0008555 fsaA CDS
Automated Process Approved Go view Escherichia coli EC4486 (EHEC) BAU-0006763 fsaA CDS
Automated Process Approved Go view Escherichia coli EC4501 (EHEC) BAT-0008894 fsaA CDS
Automated Process Approved Go view Escherichia coli EC508 (EHEC) BBJ-0007606 fsaA CDS
Automated Process Approved Go view Escherichia coli EC869 (EHEC) BBC-0007354 fsaA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024870 fsaA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008932 fsaA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005562 fsaA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001163 CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0000793 fsaA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000833 fsaA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001119 fsa CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001082 fsa CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001016 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000910 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174993 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000907 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000849 fsaA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130816 fsaA CDS
Automated Process Approved Go view Escherichia coli TW14588 (EHEC) BBK-0005564 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000830 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001934 CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003754 CDS
Person Approved Go view Shigella boydii 227 ADV-0000779 mipB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007934 fsaA CDS
Automated Process Approved Go view Shigella dysenteriae 1012 BAA-0005674 fsaA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000856 mipB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071824 mipB CDS
Person Approved Go view Shigella flexneri 301 ABT-0087131 mipB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000852 mipB CDS
Person Approved Go view Shigella sonnei 046 ADD-0000868 fsaA CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005800 mipB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003657 fsaA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002735 mipB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003355 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010711 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004563 CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0002818 fsaA lambda repressor assay Doodle - bnumber: b0825 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22156mutantTn5 InsertionRequest the StrainABE-0002818fsaAmipB::Tn5KAN-I-SceI at position 363 in Minus orientation ,+ pKD465Blattner Laboratory
FB22282mutantTn5 InsertionRequest the StrainABE-0002818fsaAmipB::Tn5KAN-I-SceI at position 366 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 858642 to 869304
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002804ybiUCDScomplement857796859061Upstream
ABE-0002807ybiVCDScomplement859213860028Upstream
ABE-0002810ybiWCDScomplement860174862606Upstream
ABE-0002812ybiYCDScomplement862612863511Upstream
ABE-0002818fsaACDSforward863642864304Matches
ABE-0285407repeat_regionforward864333864370Downstream
ABE-0002820moeBCDScomplement864380865129Downstream
ABE-0002823moeACDScomplement865129866364Downstream
ABE-0002828iaaACDSforward866568867533Downstream
ABE-0002830gsiACDSforward867520869391Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.