Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002820 (moeB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002820 showshow history
Names
moeB JW0810 ECK0816 chlN b0826
Product
molybdopterin synthase sulfurylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 864380 865129 750 250
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000331
EnteroFam0002820: Trusted threshold=630.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR007901 (IPR007901 (DEPRECATED) MoeZ/MoeB) Apr 2008
Automated Process Approved IPR009036 (IPR009036 (DEPRECATED) Molybdenum cofactor biosynthesis, MoeB) Apr 2008
Automated Process Approved IPR000594 (IPR000594 THIF-type NAD/FAD binding fold) Apr 2008
Automated Process Approved IPR012730 (IPR012730 Molybdopterin synthase sulfurylase MoeB) Apr 2008
Automated Process Approved IPR035985 (IPR035985 Ubiquitin-activating enzyme) Jul 2018
Automated Process Approved PF00899 (PF00899 ThiF family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006777 Mo-molybdopterin cofactor biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006777 Mo-molybdopterin cofactor biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012730
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0008641 ubiquitin-like modifier activating enzyme activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000594, IPR035985
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000594
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name moeB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym chlN Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW0810 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0816 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0826 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product molybdopterin synthase sulfurylase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name ATP-dependent adenylate transferase, modifies MoaD Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name molybdopterin biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002820: Trusted threshold=630.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000331
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR007901 (DEPRECATED) MoeZ/MoeB Protein Sequence Similarity - InterPro Domain: IPR007901
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009036 (DEPRECATED) Molybdenum cofactor biosynthesis, MoeB Protein Sequence Similarity - InterPro Domain: IPR009036
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000594 THIF-type NAD/FAD binding fold Protein Sequence Similarity - InterPro Domain: IPR000594
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012730 Molybdopterin synthase sulfurylase MoeB Protein Sequence Similarity - InterPro Domain: IPR012730
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR035985 Ubiquitin-activating enzyme Protein Sequence Similarity - InterPro Domain: IPR035985
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00899 ThiF family Protein Sequence Similarity - PFAM Model Name: PF00899
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 1.5.3.4 (metabolism; building block biosynthesis; cofactor, small molecule carrier; molybdenum) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10154 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787048 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945452 Published Annotation - Entrez Gene Database ID: 945452
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P12282 Published Annotation - Swiss-Prot Accession Number: P12282 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P12282 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002820 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Molybdopterin Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note molybdopterin biosynthesis; GO_process: GO:0006777 - Mo-molybdopterin cofactor biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73913.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0006777 Mo-molybdopterin cofactor biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006777 Mo-molybdopterin cofactor biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012730
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0008641 ubiquitin-like modifier activating enzyme activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000594, IPR035985
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000594
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000331 moeB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000260 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000957 moeB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001016 moeB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001102 moeB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000387 moeB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001263 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001189 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002955 moeB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001150 moeB CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001655 moeB_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002175 moeB_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007433 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020196 moeB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001575 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001853 moeB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300118 moeB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001437 moeB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002263 moeB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000056 moeB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007654 moeB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000846 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005682 moeB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000731 moeB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003541 moeB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008716 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007775 moeB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006310 MoeB CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077002 moeB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000825 moeB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001059 moeB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007804 moeB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008212 moeB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000821 moeB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005343 moeB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002039 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009678 moeB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008728 moeB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005994 moeB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008117 moeB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005816 moeB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008948 moeB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009558 moeB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008556 moeB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006764 moeB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008893 moeB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007605 moeB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007355 moeB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024872 moeB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008933 moeB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005563 moeB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001162 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000794 moeB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000834 moeB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001120 moeB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001083 moeB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001015 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000911 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174994 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000908 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000850 moeB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130817 moeB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005565 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000831 moeB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000965 moeB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002100 moeB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000861 moeB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003755 moeB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007279 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000602 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001187 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000632 moeB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003575 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001346 moeB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002927 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009026 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003017 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004439 moeB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063110 moeB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002808 moeB CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000735 moeB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004376 moeB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006259 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140273 moeB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001140 moeB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005064 moeB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002185 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000999 moeB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005219 moeB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002667 moeB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002585 moeB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008045 moeB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005340 moeB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004696 moeB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007297 moeB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005268 moeB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004476 moeB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005283 moeB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007815 moeB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001922 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001910 moeB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002665 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005569 moeB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005776 moeB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005085 moeB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006108 moeB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107025 moeB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083758 moeB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000989 moeB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093095 moeB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008589 moeB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006361 moeB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006348 moeB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004266 moeB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263676 moeB CDS
Person Approved Go view Shigella boydii 227 ADV-0000780 moeB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007933 moeB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005675 moeB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000855 moeB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071826 moeB CDS
Person Approved Go view Shigella flexneri 301 ABT-0087132 moeB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000853 moeB CDS
Person Approved Go view Shigella sonnei 046 ADD-0000869 moeB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003508 VCA0618 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002639 moeB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001127 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008162 chlN CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002253 chlN CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001308 moeB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002573 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237530 moeB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007117 moeB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000962 moeB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005620 moeB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001779 moeB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120213 moeB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005626 moeB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004421 moeB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001315 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009038 moeB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004957 moeB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032407 moeB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007813 moeB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002987 moeB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001774 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006622 moeB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006464 moeB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001582 moeB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001919 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003059 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010724 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004559 moeB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 859380 to 870129
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002807ybiVCDScomplement859213860028Downstream
ABE-0002810ybiWCDScomplement860174862606Downstream
ABE-0002812ybiYCDScomplement862612863511Downstream
ABE-0002818fsaACDSforward863642864304Downstream
ABE-0285407repeat_regionforward864333864370Downstream
ABE-0002820moeBCDScomplement864380865129Matches
ABE-0002823moeACDScomplement865129866364Overlaps Upstream
ABE-0002828iaaACDSforward866568867533Upstream
ABE-0002830gsiACDSforward867520869391Upstream
ABE-0002832gsiBCDSforward869411870949Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.