Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002830 (gsiA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002830 showshow history
Names
gsiA JW5897 ECK0819 yliA b0829
Product
ATP-binding component of a glutathione transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 867520 869391 1872 624
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR013563 (IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Automated Process Approved PF08352 (PF08352 Oligopeptide/dipeptide transporter, C-terminal region) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0015833 peptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013563
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gsiA Published Annotation - PubMed ID: 16109926
Reference: Escherichia coli K-12 		Sep 2007
Person Approved synonym yliA Published Annotation - Swiss-Prot Accession Number: P75796 Aug 2002
Person Approved synonym JW5897 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0819 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0829 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product ATP-binding component of a glutathione transporter Experimental - PubMed ID: 16109926
Reference: Escherichia coli K-12 		Sep 2007
Automated Process Approved alternate product name glutathione transporter ATP-binding protein, ABC superfamily Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF08352 Oligopeptide/dipeptide transporter, C-terminal region Protein Sequence Similarity - PFAM Model Name: PF08352
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013563
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 4.S.152 (transport; substrate; peptide) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved comment The coordinates of yliA have been changed from those reported in the GenBank entry (GBAN:U00096.2) to correspond to the start site predicted in EcoGene (EG13472) and by GeneMark.hmm using multiple models, adding 11 codons to the N-terminus. Published Annotation in EcoGene - EG Number: EG13472
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Automated Process Approved db xref ASAP:ABE-0002830 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945457 Published Annotation - Entrez Gene Database ID: 945457
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG13472 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P75796 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:145693107 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P75796 Published Annotation - Swiss-Prot Accession Number: P75796 Jan 2005
Person Approved function putative transport; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative ATP-binding component of a transport system; GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73916.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 9.93
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0015833 peptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013563
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000008 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001886 gsiA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001469 gsiA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000138 gsiA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000173 gsiA CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002952 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001154 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001658 gsiA_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002179 gsiA_1 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001856 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300128 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001440 yliA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002260 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000053 gsiA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007657 gsiA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000849 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005679 gsiA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000734 yliA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003538 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008713 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007772 gsiA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006313 GsiA CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077005 gsiA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000828 gsiA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007801 gsiA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008209 gsiA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000824 gsiA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005346 gsiA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002043 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009682 gsiA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008732 gsiA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005998 gsiA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008121 gsiA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005820 gsiA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008952 gsiA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009562 gsiA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008560 gsiA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006768 gsiA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008889 gsiA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007601 gsiA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007359 gsiA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024876 CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008936 gsiA_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005566 gsiA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001159 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000797 gsiA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000837 yliA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001123 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001086 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001012 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000914 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174997 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000911 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000853 gsiA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130821 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005569 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000834 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000864 yliA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003758 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005067 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002183 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001002 yliA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005222 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002679 yliA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002595 yliA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008042 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005343 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004699 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007300 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005271 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004479 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005286 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007818 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001919 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001907 yliA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002662 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005572 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005773 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005088 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006111 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107033 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083755 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000993 yliA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093105 yliA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008586 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006357 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006351 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004261 CDS
Person Approved Go view Shigella boydii 227 ADV-0000783 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007930 gsiA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000852 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071829 CDS
Person Approved Go view Shigella flexneri 301 ABT-0087135 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000856 CDS
Person Approved Go view Shigella sonnei 046 ADD-0000872 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010738 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004556 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 862520 to 874391
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002810ybiWCDScomplement860174862606Upstream
ABE-0002812ybiYCDScomplement862612863511Upstream
ABE-0002818fsaACDSforward863642864304Upstream
ABE-0285407repeat_regionforward864333864370Upstream
ABE-0002820moeBCDScomplement864380865129Upstream
ABE-0002823moeACDScomplement865129866364Upstream
ABE-0002828iaaACDSforward866568867533Overlaps Upstream
ABE-0002830gsiACDSforward867520869391Matches
ABE-0002832gsiBCDSforward869411870949Downstream
ABE-0002834gsiCCDSforward870967871887Downstream
ABE-0002836gsiDCDSforward871890872801Downstream
ABE-0002839pdeICDSforward872979875327Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.