Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002836 (gsiD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002836 showshow history
Names
gsiD JW0816 ECK0822 yliD b0832
Product
permease component of a glutathione transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 871890 872801 912 304
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Apr 2008
Automated Process Approved IPR025966 (IPR025966 Oligopeptide transport permease C-like, N-terminal domain) Jul 2018
Automated Process Approved IPR035906 (IPR035906 MetI-like superfamily) Jul 2018
Automated Process Approved PF12911 (PF12911 N-terminal TM domain of oligopeptide transport permease C) Jul 2018
Automated Process Approved PF00528 (PF00528 Binding-protein-dependent transport system inner membrane component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gsiD Published Annotation - PubMed ID: 16109926
Reference: Escherichia coli K-12 		Sep 2007
Person Approved synonym yliD Published Annotation - Swiss-Prot Accession Number: P75799 Aug 2002
Person Approved synonym JW0816 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0822 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0832 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product permease component of a glutathione transporter Experimental - PubMed ID: 16109926
Reference: Escherichia coli K-12 		Sep 2007
Automated Process Approved alternate product name glutathione transporter, permease component, ABC superfamily Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00528 Binding-protein-dependent transport system inner membrane component Protein Sequence Similarity - PFAM Model Name: PF00528
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR025966 Oligopeptide transport permease C-like, N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR025966
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF12911 N-terminal TM domain of oligopeptide transport permease C Protein Sequence Similarity - PFAM Model Name: PF12911
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR035906 MetI-like superfamily Protein Sequence Similarity - InterPro Domain: IPR035906
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.152 (transport; substrate; peptide) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.2.3 (metabolism; macromolecule degradation; proteins/peptides/glycopeptides) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13475 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P75799 Published Annotation - Swiss-Prot Accession Number: P75799 Jan 2005
Automated Process Approved db xref GeneID:945461 Published Annotation - Entrez Gene Database ID: 945461
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1787054 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002836 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P75799 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative transport system permease protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73919.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002767 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002174 gsiD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002129 gsiD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001353 gsiD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001795 gsiD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001268 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001184 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002949 gsiD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001157 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001661 gsiD CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002182 gsiD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009147 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0019460 CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004114 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001859 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300147 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001443 yliD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002257 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000050 gsiD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007660 gsiD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000853 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005676 gsiD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000738 yliD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003535 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008709 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007769 gsiD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006316 GsiD CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077008 gsiD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000831 gsiD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001066 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007798 gsiD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008206 gsiD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000827 gsiD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005349 gsiD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002046 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009685 gsiD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008735 gsiD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006001 gsiD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008124 gsiD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005823 gsiD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008955 gsiD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009565 gsiD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008563 gsiD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006771 gsiD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008886 gsiD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007598 gsiD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007362 gsiD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024879 CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008939 gsiD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005569 gsiD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001156 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000800 gsiD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000840 yliD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001126 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001089 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001009 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000917 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175001 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000914 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000856 gsiD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130824 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005572 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000837 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000974 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000867 yliD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003761 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004516 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000608 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001193 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000638 yliD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003568 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001352 yliD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002921 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009033 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003023 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004445 ylid1 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063105 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001657 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004382 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006266 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005070 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002180 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001006 yliD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005225 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002696 yliD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002612 yliD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008039 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005346 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004702 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007303 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005274 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004482 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005289 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007821 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001916 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001904 yliD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002659 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005575 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005770 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005091 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006114 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107046 yliD CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083752 yliD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000996 yliD CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0093114 yliD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008583 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006354 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006354 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004258 CDS
Person Approved Go view Shigella boydii 227 ADV-0000786 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007927 gsiD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005688 gsiD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000849 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071832 CDS
Person Approved Go view Shigella flexneri 301 ABT-0087138 CDS
Person Approved Go view Shigella sonnei 046 ADD-0000875 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010768 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004553 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22129mutantTn5 InsertionRequest the StrainABE-0002836gsiDb0832::Tn5KAN-I-SceI at position 485 in Minus orientation ,+ pKD465Blattner Laboratory
FB22284mutantTn5 InsertionRequest the StrainABE-0002836gsiDb0832::Tn5KAN-I-SceI at position 485 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 866890 to 877801
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002828iaaACDSforward866568867533Upstream
ABE-0002830gsiACDSforward867520869391Upstream
ABE-0002832gsiBCDSforward869411870949Upstream
ABE-0002834gsiCCDSforward870967871887Upstream
ABE-0002836gsiDCDSforward871890872801Matches
ABE-0002839pdeICDSforward872979875327Downstream
ABE-0002841dgcICDSforward875335876663Downstream
ABE-0002843rimOCDScomplement876710878035Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.