Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002860 (dacC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002860 showshow history
Names
dacC JW0823 ECK0829 b0839
Product
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 880727 881929 1203 401
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012338 (IPR012338 Beta-lactamase/transpeptidase-like) Apr 2008
Automated Process Approved IPR001967 (IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal) Apr 2008
Automated Process Approved IPR012907 (IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal) Apr 2008
Automated Process Approved IPR015956 (IPR015956 Penicillin-binding protein, C-terminal domain superfamily) Jul 2018
Automated Process Approved PF00768 (PF00768 D-alanyl-D-alanine carboxypeptidase) Jul 2018
Automated Process Approved PF07943 (PF07943 Penicillin-binding protein 5, C-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0042493 response to drug Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001967
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0004180 carboxypeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015956
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0009002 serine-type D-Ala-D-Ala carboxypeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001967
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dacC Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK0829 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0823 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0839 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6 Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR012338 Beta-lactamase/transpeptidase-like Protein Sequence Similarity - InterPro Domain: IPR012338
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00768 D-alanyl-D-alanine carboxypeptidase Protein Sequence Similarity - PFAM Model Name: PF00768
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR015956 Penicillin-binding protein, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR015956
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF07943 Penicillin-binding protein 5, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF07943
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal Protein Sequence Similarity - InterPro Domain: IPR012907
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal Protein Sequence Similarity - InterPro Domain: IPR001967
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 3.4.16.4 Published Annotation - Swiss-Prot Accession Number: P08506 Feb 2006
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.1 (cell processes; cell division) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.6.4 (cell processes; protection; drug resistance/sensitivity) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P08506 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945455 Published Annotation - Entrez Gene Database ID: 945455
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P08506 Published Annotation - Swiss-Prot Accession Number: P08506 Jan 2005
Automated Process Approved db xref ASAP:ABE-0002860 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10203 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787062 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Murein sacculus, peptidoglycan Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0042493 - response to drug Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73926.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001967
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0042493 response to drug Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0004180 carboxypeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015956
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0009002 serine-type D-Ala-D-Ala carboxypeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001967
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001497 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001767 dacC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001683 dacC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000023 dacA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000021 dacA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000790 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000295 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002940 dacC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001168 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001666 dacC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002187 dacC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007244 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0019836 dacC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001739 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001866 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300155 dacC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001446 dacC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002255 dacC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000042 dacC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007669 dacC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000860 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005669 dacC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000747 dacC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003528 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008696 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007762 dacC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006324 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077015 dacC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000838 dacC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001073 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007791 dacC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008199 dacC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000834 dacC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005356 dacC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002056 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009694 dacC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008744 dacC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006010 dacC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008133 dacC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005832 dacC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008964 dacC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008572 dacC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006780 dacC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008877 dacC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007589 dacC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007371 dacC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024889 dacC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008946 dacC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005578 dacC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001149 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000807 dacC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000847 dacC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001133 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001096 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001002 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000924 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175008 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000921 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000865 dacC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130832 dacC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005581 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000844 dacC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001456 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002205 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000873 dacC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003786 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007094 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000614 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001199 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000644 dacC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003562 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001358 dacC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002904 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009040 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003028 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004451 dacC CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062954 dacC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003690 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001881 dacC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002685 dacC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006494 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004897 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005077 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002174 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001021 dacC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005240 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002736 dacC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002653 dacC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008022 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005360 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004718 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007317 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005281 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004488 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005304 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007837 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001911 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001899 dacC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002641 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005590 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005754 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005104 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006127 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107056 dacC CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083747 dacC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001015 dacC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093146 dacC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008566 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006338 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006368 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004176 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007917 dacC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005695 dacC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000948 dacC CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0071839 dacC pseudogene
Person Uncurated Go view Shigella flexneri 301 ABT-0087144 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002708 dacC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002110 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004462 dacC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001267 dacC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003324 dacC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003193 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237277 dacC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005660 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005429 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002064 dacC CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119645 dacC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006188 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004606 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002535 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005263 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005153 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032605 dacC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005302 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003194 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002851 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006645 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001423 dacC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001717 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003249 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010803 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004545 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 875727 to 886929
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002841dgcICDSforward875335876663Upstream
ABE-0002843rimOCDScomplement876710878035Upstream
ABE-0002849bssRCDSforward878248878631Upstream
ABE-0002852yliICDSforward878742879857Upstream
ABE-0002855gstBCDScomplement879854880480Upstream
ABE-0002860dacCCDSforward880727881929Matches
ABE-0285408repeat_regionforward881940881966Downstream
ABE-0002862deoRCDScomplement881976882734Downstream
ABE-0002865ybjGCDScomplement882792883388Downstream
ABE-0002871mdfACDSforward883673884905Downstream
ABE-0002873ybjHCDScomplement884946885230Downstream
ABE-0002877ybjICDScomplement885316886131Downstream
ABE-0002880ybjJCDScomplement886131887339Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.