Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002865 (ybjG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002865 showshow history
Names
ybjG bcrC JW5112 ECK0831 b0841
Product
undecaprenyl pyrophosphate phosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 882792 883388 597 199
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000326 (IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase) Apr 2008
Automated Process Approved IPR036938 (IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily) Jul 2018
Automated Process Approved PF01569 (PF01569 PAP2 superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ybjG Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Person Approved synonym JW5112 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0831 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym bcrC Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved locus tag b0841 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product undecaprenyl pyrophosphate phosphatase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name putative permease Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Protein Sequence Similarity - InterPro Domain: IPR000326
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily Protein Sequence Similarity - InterPro Domain: IPR036938
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF01569 PAP2 superfamily Protein Sequence Similarity - PFAM Model Name: PF01569
Reference: Escherichia coli K-12 MG1655
Jul 2018
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG13676 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P75806 Published Annotation - Swiss-Prot Accession Number: P75806 Jan 2005
Automated Process Approved db xref GeneID:945450 Published Annotation - Entrez Gene Database ID: 945450
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref GI:1787064 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P75806 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0002865 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC73928.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved regulation expression regulated by magnesium; induced ybjG promoter-driven expression after 20 hours is inhibited by magnesium Experimental - PubMed ID: 16269676
Reference: Escherichia coli K-12 MG1655
Nov 2005
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005379 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002055 ybjG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001958 ybjG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000321 ybjG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002108 ybjG CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002938 ybjG CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001170 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001668 ybjG CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002189 ybjG CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001868 CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002253 ybjG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000040 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007671 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000862 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005667 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000750 ybjG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003526 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008694 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007760 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006326 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077017 ybjG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000840 ybjG CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001075 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007789 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008197 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000836 ybjG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005358 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002058 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009696 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008746 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006012 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008135 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005834 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008966 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009576 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008574 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006782 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008875 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007587 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007373 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024891 ybjG CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008948 ybjG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005580 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001147 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000809 ybjG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000849 ybjG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001135 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001098 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001000 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000926 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175010 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000923 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000867 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130834 ybjG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005583 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000846 ybjG CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001457 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000875 ybjG CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003788 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000615 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001200 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000645 ybjG CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003561 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001359 ybjG CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002903 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009041 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003029 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004452 bcrC CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140372 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005079 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002172 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001023 ybjG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005242 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002744 ybjG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002661 ybjG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008020 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005362 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004720 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007319 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005283 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004490 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005306 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007839 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001909 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001897 ybjG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002639 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005592 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005752 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005106 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006129 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107061 ybjG CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083745 ybjG CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001017 ybjG CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093151 ybjG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008564 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006336 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006370 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004158 CDS
Person Approved Go view Shigella boydii 227 ADV-0000805 ybjG CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007915 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005697 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000950 ybjG CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071844 ybjG CDS
Person Approved Go view Shigella flexneri 301 ABT-0087149 ybjG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000871 ybjG CDS
Person Approved Go view Shigella sonnei 046 ADD-0000889 ybjG CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002714 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002115 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004477 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001272 ybjG CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003319 ybjG CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003198 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237251 ybjG CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005668 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000755 ybjG CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005436 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002060 ybjG CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119665 ybjG CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006195 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004600 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002531 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005256 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005146 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032600 ybjG CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005296 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003190 ybjG CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002847 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005956 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006637 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001427 ybjG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001722 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003245 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010811 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004543 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 877792 to 888388
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002843rimOCDScomplement876710878035Downstream
ABE-0002849bssRCDSforward878248878631Downstream
ABE-0002852yliICDSforward878742879857Downstream
ABE-0002855gstBCDScomplement879854880480Downstream
ABE-0002860dacCCDSforward880727881929Downstream
ABE-0285408repeat_regionforward881940881966Downstream
ABE-0002862deoRCDScomplement881976882734Downstream
ABE-0002865ybjGCDScomplement882792883388Matches
ABE-0002871mdfACDSforward883673884905Upstream
ABE-0002873ybjHCDScomplement884946885230Upstream
ABE-0002877ybjICDScomplement885316886131Upstream
ABE-0002880ybjJCDScomplement886131887339Upstream
ABE-0002885rcdACDSforward887423887959Upstream
ABE-0047241rybBncRNAcomplement887976888054Upstream
ABE-0002887ybjLCDScomplement888134889819Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.