Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002871 (mdfA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002871 showshow history
Names
mdfA cmlA JW0826 ECK0832 cmr b0842
Product
multidrug efflux system protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 883673 884905 1233 411
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011701 (IPR011701 Major facilitator superfamily) Apr 2008
Automated Process Approved IPR005829 (IPR005829 Sugar transporter, conserved site) Apr 2008
Automated Process Approved IPR007114 (IPR007114 (DEPRECATED) Major facilitator superfamily) Apr 2008
Automated Process Approved IPR036259 (IPR036259 MFS transporter superfamily) Jul 2018
Automated Process Approved PF07690 (PF07690 Major Facilitator Superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0042493 response to drug Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name mdfA Published Annotation - Database Name: GenProtEC Jul 2002
Person Approved synonym ECK0832 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym cmlA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved synonym JW0826 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym cmr Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Person Approved locus tag b0842 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product multidrug efflux system protein Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR011701 Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR011701
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR007114 (DEPRECATED) Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR007114
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF07690 Major Facilitator Superfamily Protein Sequence Similarity - PFAM Model Name: PF07690
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR036259 MFS transporter superfamily Protein Sequence Similarity - InterPro Domain: IPR036259
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR005829 Sugar transporter, conserved site Protein Sequence Similarity - InterPro Domain: IPR005829
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.126 (transport; substrate; multidrug) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.6.4 (cell processes; protection; drug resistance/sensitivity) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.1 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Major Facilitator Superfamily (MFS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG13696 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AEY8 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:945448 Published Annotation - Entrez Gene Database ID: 945448
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved db xref UniProtKB:P0AEY8 Published Annotation - Swiss-Prot Accession Number: P0AEY8 Jan 2006
Automated Process Approved db xref GI:1787065 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0002871 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function transport; Transport of small molecules: Other Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note proton motive force efflux pump; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0042493 - response to drug Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC73929.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0042493 response to drug Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005380 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001912 mdfA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001968 mdfA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002913 mdfA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002143 mdfA CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002937 mdfA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001172 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001669 mdtM_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002190 mdtM_2 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001870 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302347 cmr CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002230 mdfA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001555 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000038 mdfA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007672 mdfA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000863 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005666 mdfA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000751 cmr CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003525 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008693 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007759 mdfA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006327 MdfA CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077018 mdfA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000841 mdfA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001076 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007788 mdfA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008196 mdfA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000837 cmr CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005360 mdfA CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009697 mdfA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008747 mdfA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006013 mdfA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008136 mdfA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005835 mdfA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008967 mdfA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009577 mdfA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008575 mdfA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006783 mdfA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008874 mdfA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007586 mdfA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007374 mdfA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024892 cmr CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008949 mdfA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005582 mdfA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001146 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000810 cmr CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000850 cmr CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001136 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001099 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000999 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000927 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175011 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000924 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000868 mdfA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130835 cmr CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005585 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000847 cmr CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003605 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000696 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000876 cmr CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003790 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003873 cmr CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003640 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002286 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287622 mdfA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0008266 dfoS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005080 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002171 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001024 cmr CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005243 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002748 mdfA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002664 mdfA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008019 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005363 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004721 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007320 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005284 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004491 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005307 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007840 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001908 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001896 cmr CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002638 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005593 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005751 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005107 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006130 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107063 cmr CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083744 cmr CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001018 mdfA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093155 cmr CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008563 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006335 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006371 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000880 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0000806 cmr CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005698 mdfA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071845 cmr CDS
Person Approved Go view Shigella flexneri 301 ABT-0087150 cmr CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000872 cmr CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000171 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011905 cmr CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002368 cmr CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002117 mdfA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002997 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243794 cmr CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007883 mdfA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003635 mdfA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007249 mdfA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003355 cmr CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128976 mdfA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005813 mdfA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008910 mdfA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003734 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006162 mdfA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006695 mdfA CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033867 cmr CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006706 mdfA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004442 mdfA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000055 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004745 mdfA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008149 mdfA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0004056 cmr CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000010 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000057 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010814 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004542 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22130mutantTn5 InsertionRequest the StrainABE-0002871mdfAcmr::Tn5KAN-I-SceI at position 512 in Minus orientation ,+ pKD465Blattner Laboratory
FB22287mutantTn5 InsertionRequest the StrainABE-0002871mdfAcmr::Tn5KAN-I-SceI at position 512 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 878673 to 889905
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002852yliICDSforward878742879857Upstream
ABE-0002855gstBCDScomplement879854880480Upstream
ABE-0002860dacCCDSforward880727881929Upstream
ABE-0285408repeat_regionforward881940881966Upstream
ABE-0002862deoRCDScomplement881976882734Upstream
ABE-0002865ybjGCDScomplement882792883388Upstream
ABE-0002871mdfACDSforward883673884905Matches
ABE-0002873ybjHCDScomplement884946885230Downstream
ABE-0002877ybjICDScomplement885316886131Downstream
ABE-0002880ybjJCDScomplement886131887339Downstream
ABE-0002885rcdACDSforward887423887959Downstream
ABE-0047241rybBncRNAcomplement887976888054Downstream
ABE-0002887ybjLCDScomplement888134889819Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.