Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002877 (ybjI) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002877 showshow history
Names
ybjI JW5113 ECK0834 b0844
Product
5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 885316 886131 816 272
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006379 (IPR006379 HAD-superfamily hydrolase, subfamily IIB) Apr 2008
Automated Process Approved IPR000150 (IPR000150 Cof family) Apr 2008
Automated Process Approved IPR005834 (IPR005834 (DEPRECATED) Haloacid dehalogenase-like hydrolase) Apr 2008
Automated Process Approved IPR036412 (IPR036412 HAD-like superfamily) Jul 2018
Automated Process Approved PF08282 (PF08282 haloacid dehalogenase-like hydrolase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006379
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006379
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ybjI Published Annotation - Swiss-Prot Accession Number: P75809 Aug 2002
Person Approved synonym JW5113 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0834 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0844 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase Published Annotation - EcoCyc Accession Number: G6442
Reference: Escherichia coli K-12 MG1655 		Feb 2021
Person Uncurated alternate product name 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione 5'-phosphate phosphatase Experimental - PubMed ID: 24123841
Reference: Escherichia coli 		Feb 2021
Automated Process Approved alternate product name FMN and erythrose-4-P phosphatase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name FMN phosphatase Experimental - PubMed ID: 16990279
Reference: Escherichia coli K-12 W3110 		Feb 2021
Person Uncurated alternate product name conserved protein, phophatase-like domain Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR005834 (DEPRECATED) Haloacid dehalogenase-like hydrolase Protein Sequence Similarity - InterPro Domain: IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF08282 haloacid dehalogenase-like hydrolase Protein Sequence Similarity - PFAM Model Name: PF08282
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036412 HAD-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036412
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006379 HAD-superfamily hydrolase, subfamily IIB Protein Sequence Similarity - InterPro Domain: IPR006379
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000150 Cof family Protein Sequence Similarity - InterPro Domain: IPR000150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 3.1.3.104 Experimental - PubMed ID: 24123841
Reference: Escherichia coli 		Feb 2021
Person Uncurated EC number 3.1.3.102 Experimental - PubMed ID: 16990279
Reference: Escherichia coli K-12 W3110 		Feb 2021
Automated Process Uncurated EC number 3.-.-.- Published Annotation - Database Name: EC2GO: GO:0016787
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 3.1.3.- Published Annotation - Swiss-Prot Accession Number: P75809 Feb 2006
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002877 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P75809 Published Annotation - Swiss-Prot Accession Number: P75809 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P75809 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945470 Published Annotation - Entrez Gene Database ID: 945470
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:87081790 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13678 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73931.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006379
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006379
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002991 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002409 ybjI CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002453 ybjI CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0007065 ybjI CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002300 ybjI CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001403 ybjI CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002819 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001670 ybjI CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002192 ybjI CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001871 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000036 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007674 ybjI CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000865 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005664 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000753 ybjI CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003523 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008690 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007757 ybjI CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006329 YbjI CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077020 ybjI CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000843 ybjI CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001078 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007786 ybjI CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008194 ybjI CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000839 ybjI CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005362 ybjI CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002062 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009699 ybjI CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008749 ybjI CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006015 ybjI CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008138 ybjI CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005837 ybjI CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008969 ybjI CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009579 ybjI CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008577 ybjI CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006785 ybjI CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008872 ybjI CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007584 ybjI CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007376 ybjI CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024894 ybjI CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008951 ybjI CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005584 ybjI CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001144 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000812 ybjI CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000852 ybjI CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001138 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001101 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000997 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000929 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175013 pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0000926 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000870 ybjI CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130837 ybjI CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005587 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000849 ybjI CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003528 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000877 ybjI CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003791 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005081 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002170 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001025 ybjI CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005244 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002752 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002668 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008018 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005364 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004722 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007321 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005285 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004492 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005308 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007841 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001907 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001895 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002637 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005594 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005750 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005108 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006131 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107065 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083743 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001019 CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0093157 CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008562 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006334 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006372 CDS
Person Approved Go view Shigella boydii 227 ADV-0000808 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007912 ybjI CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005700 ybjI CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071847 CDS
Person Approved Go view Shigella flexneri 301 ABT-0087152 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000874 CDS
Person Approved Go view Shigella sonnei 046 ADD-0000892 ybjI CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000412 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007209 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002917 ybjI CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000348 ybjI CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000068 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010818 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004541 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22131mutantTn5 InsertionRequest the StrainABE-0002877ybjIb0844::Tn5KAN-I-SceI at position 592 in Minus orientation ,+ pKD465Blattner Laboratory
FB22289mutantTn5 InsertionRequest the StrainABE-0002877ybjIb0844::Tn5KAN-I-SceI at position 592 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 880316 to 891131
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002855gstBCDScomplement879854880480Downstream
ABE-0002860dacCCDSforward880727881929Downstream
ABE-0285408repeat_regionforward881940881966Downstream
ABE-0002862deoRCDScomplement881976882734Downstream
ABE-0002865ybjGCDScomplement882792883388Downstream
ABE-0002871mdfACDSforward883673884905Downstream
ABE-0002873ybjHCDScomplement884946885230Downstream
ABE-0002877ybjICDScomplement885316886131Matches
ABE-0002880ybjJCDScomplement886131887339Overlaps Upstream
ABE-0002885rcdACDSforward887423887959Upstream
ABE-0047241rybBncRNAcomplement887976888054Upstream
ABE-0002887ybjLCDScomplement888134889819Upstream
ABE-0002891ybjMCDSforward890089890466Upstream
ABE-0002893grxACDScomplement890496890753Upstream
ABE-0002898ybjCCDSforward890913891200Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.