Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002893 (grxA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002893 showshow history
Names
grxA grx JW0833 ECK0840 b0849
Product
glutaredoxin 1
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 890496 890753 258 86
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000336
EnteroFam0002893: Trusted threshold=218.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR012336 (IPR012336 Thioredoxin-like fold) Apr 2008
Automated Process Approved IPR002109 (IPR002109 Glutaredoxin) Apr 2008
Automated Process Approved IPR012335 (IPR012335 (DEPRECATED) Thioredoxin fold) Apr 2008
Automated Process Approved IPR011767 (IPR011767 Glutaredoxin active site) Apr 2008
Automated Process Approved IPR014025 (IPR014025 Glutaredoxin subgroup) Apr 2008
Automated Process Approved IPR011902 (IPR011902 Glutaredoxin, GrxA) Apr 2008
Automated Process Approved IPR036249 (IPR036249 Thioredoxin-like superfamily) Jul 2018
Automated Process Approved PF00462 (PF00462 Glutaredoxin) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011767
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0045454 cell redox homeostasis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015035 protein-disulfide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name grxA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0840 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym grx Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW0833 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0849 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product glutaredoxin 1 Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name glutaredoxin 1 redox coenzyme for glutathione-dependent ribonucleotide reductase Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name glutaredoxin1 redox coenzyme for glutathione-dependent ribonucleotide reductase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002893: Trusted threshold=218.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000336
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR012336 Thioredoxin-like fold Protein Sequence Similarity - InterPro Domain: IPR012336
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002109 Glutaredoxin Protein Sequence Similarity - InterPro Domain: IPR002109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011767 Glutaredoxin active site Protein Sequence Similarity - InterPro Domain: IPR011767
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00462 Glutaredoxin Protein Sequence Similarity - PFAM Model Name: PF00462
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036249 Thioredoxin-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036249
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012335 (DEPRECATED) Thioredoxin fold Protein Sequence Similarity - InterPro Domain: IPR012335
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011902 Glutaredoxin, GrxA Protein Sequence Similarity - InterPro Domain: IPR011902
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014025 Glutaredoxin subgroup Protein Sequence Similarity - InterPro Domain: IPR014025
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.6.15.2 (metabolism; macromolecules (cellular constituent) biosynthesis; large molecule carriers; thioredoxin, glutaredoxin) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945479 Published Annotation - Entrez Gene Database ID: 945479
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P68688 Published Annotation - Swiss-Prot Accession Number: P68688 Jan 2006
Automated Process Approved db xref GI:1787073 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P68688 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002893 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10417 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function carrier; Biosynthesis of cofactors, carriers: Thioredoxin, glutaredoxin, glutathione Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note glutaredoxin1 redox coenzyme for glutathione-dependent ribonucleotide reductase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73936.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011767
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0045454 cell redox homeostasis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015035 protein-disulfide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000336 grxA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001499 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001447 grxA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001730 grxA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000995 grxA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001747 grxA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000787 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000298 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001409 grxA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002814 grxA CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001676 grxA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007239 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019825 grxA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001744 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001918 grxA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300170 CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002250 grxA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000030 grxA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007693 grxA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000870 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005658 grxA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000758 grxA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003518 grxA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008634 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007751 grxA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006335 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077073 grxA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000848 grxA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001083 grxA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007780 grxA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008188 grxA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000892 grxA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005367 grxA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002067 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009705 grxA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008755 grxA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006021 grxA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008144 grxA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005843 grxA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008975 grxA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009585 grxA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008583 grxA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006791 grxA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008866 grxA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007578 grxA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007382 grxA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024899 grxA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007092 grxA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005631 grxA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001139 grxA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000817 grxA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000858 grxA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001143 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001106 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001050 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000934 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175068 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000931 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000875 grxA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130842 grxA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005592 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000854 grxA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001467 grxA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002214 grxA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000882 grxA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003806 grxA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007090 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000619 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001203 grxA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000648 grxA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003558 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001362 grxA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002900 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009045 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003032 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004457 grxA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062949 grxA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001533 grxA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000697 grxA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002040 grxA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006501 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140376 grxA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005087 grxA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002164 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001030 grxA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005250 grxA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002770 grxA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002686 grxA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008012 grxA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005370 grxA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004728 grxA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007327 grxA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005291 grxA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004498 grxA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005314 grxA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007847 grxA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001902 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001890 grxA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002630 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005600 grxA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005744 grxA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005114 grxA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006137 grxA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107075 grxA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083738 grxA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001025 grxA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093172 grxA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008556 grxA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006328 grxA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006378 grxA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004153 grxA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266342 CDS
Person Approved Go view Shigella boydii 227 ADV-0000856 grxA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007894 grxA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005706 grxA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000839 grxA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071852 grxA CDS
Person Approved Go view Shigella flexneri 301 ABT-0087157 grxA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000879 grxA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000897 grxA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003718 grxA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001214 VC1146 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002716 grxA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002132 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004489 grxA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001275 grxA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003316 grxA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003201 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237231 grxA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005672 grxA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000758 grxA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005439 grxA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002057 grxA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119693 grxA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006198 grxA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004597 grxA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003919 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005253 grxA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005142 grxA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032596 grxA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005292 grxA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003187 grxA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002843 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005953 grxA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006633 grxA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001430 grxA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001725 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003242 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010924 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004533 grxA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 885496 to 895753
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002877ybjICDScomplement885316886131Downstream
ABE-0002880ybjJCDScomplement886131887339Downstream
ABE-0002885rcdACDSforward887423887959Downstream
ABE-0047241rybBncRNAcomplement887976888054Downstream
ABE-0002887ybjLCDScomplement888134889819Downstream
ABE-0002891ybjMCDSforward890089890466Downstream
ABE-0002893grxACDScomplement890496890753Matches
ABE-0002898ybjCCDSforward890913891200Upstream
ABE-0002900nfsACDSforward891184891906Upstream
ABE-0002903rimKCDSforward891967892869Upstream
ABE-0002910ybjNCDSforward892957893433Upstream
ABE-0002913potFCDSforward893784894896Upstream
ABE-0002915potGCDSforward894991896124Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.