Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002917 (potH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002917 showshow history
Names
potH JW0840 ECK0847 b0856
Product
membrane component of an ABC superfamily putrescine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 896134 897087 954 318
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000340
EnteroFam0002917: Trusted threshold=845.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Apr 2008
Automated Process Approved IPR000834 (IPR000834 Peptidase M14, carboxypeptidase A) Apr 2008
Automated Process Approved IPR035906 (IPR035906 MetI-like superfamily) Jul 2018
Automated Process Approved PF00528 (PF00528 Binding-protein-dependent transport system inner membrane component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006596 polyamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0015847 putrescine transport Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009310 amine catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004182 (OBSOLETE) carboxypeptidase A activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name potH Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0840 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0847 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0856 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product membrane component of an ABC superfamily putrescine transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name putrescine transport protein (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name putrescine transport protein; permease Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002917: Trusted threshold=845.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000340
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00528 Binding-protein-dependent transport system inner membrane component Protein Sequence Similarity - PFAM Model Name: PF00528
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR035906 MetI-like superfamily Protein Sequence Similarity - InterPro Domain: IPR035906
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000834 Peptidase M14, carboxypeptidase A Protein Sequence Similarity - InterPro Domain: IPR000834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 3.4.17.- Protein Sequence Similarity - InterPro Domain: IPR000834
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Uncurated MultiFun 1.1.4 (metabolism; carbon utilization; amines) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.163 (transport; substrate; putrescine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.14 (metabolism; central intermediary metabolism; polyamine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787080 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945475 Published Annotation - Entrez Gene Database ID: 945475
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P31135 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002917 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11631 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P31135 Published Annotation - Swiss-Prot Accession Number: P31135 Jan 2005
Person Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putrescine transport protein; permease; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006596 - polyamine biosynthetic process; GO_process: GO:0009310 - amine catabolic process; GO_process: GO:0015847 - putrescine transport Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73943.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006596 polyamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015847 putrescine transport Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009310 amine catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004182 (OBSOLETE) carboxypeptidase A activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000340 potH CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001503 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001768 potH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001946 potH CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002829 potH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002033 potH CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000780 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000305 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001419 potH CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002805 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001683 potH CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002208 potH CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007232 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019815 potH CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001750 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001926 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300186 potH CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001459 potH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002244 potH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000023 potH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007702 potH CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000877 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005650 potH CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000765 potH CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003511 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008626 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007744 potH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006342 potH pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077080 potH CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000855 potH CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001091 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007772 potH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008180 potH CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000899 potH CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005374 potH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002074 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009714 potH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008764 potH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006030 potH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008153 potH CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005852 potH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008984 potH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009593 potH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008592 potH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006800 potH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008857 potH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007569 potH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007389 potH CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024906 potH CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007099 potH CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005638 potH CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001132 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000824 potH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000865 potH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001151 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001114 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001058 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000941 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175075 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000938 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000883 potH CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130849 potH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005599 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000861 potH CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001473 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002222 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000889 potH CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003812 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007083 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000626 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001210 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000655 potH CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003550 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001369 potH CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002893 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009054 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003039 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004464 potH CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062943 potH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001578 potH CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003972 potH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002033 potH CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006509 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005380 potH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005094 potH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002157 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001037 potH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005257 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002789 potH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002705 potH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008005 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005377 potH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004735 potH CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007334 potH CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005298 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004505 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005321 potH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007854 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001895 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001883 potH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002623 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005607 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005737 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005121 potH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006144 potH CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107088 potH CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083731 potH CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001032 potH CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093194 potH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008549 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006321 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006385 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004147 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264837 CDS
Person Approved Go view Shigella boydii 227 ADV-0000863 potH CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007886 potH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005717 potH CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000832 potH CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071859 potH CDS
Person Approved Go view Shigella flexneri 301 ABT-0087165 potH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000886 potH CDS
Person Approved Go view Shigella sonnei 046 ADD-0000904 potH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002137 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004505 potH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001280 potH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003311 potH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003206 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237217 potH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005677 potH CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000764 potH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005445 potH CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002051 potH CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119708 potH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006204 potH CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004592 potH CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003915 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005247 potH CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005136 potH CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032589 potH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005286 potH CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003181 potH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002836 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005947 potH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006628 potH CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001435 potH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001731 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003236 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010953 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004526 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20244mutantTn5 InsertionRequest the StrainABE-0002917potHpotH::Tn5KAN-2 at position 599 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 891134 to 902087
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002898ybjCCDSforward890913891200Upstream
ABE-0002900nfsACDSforward891184891906Upstream
ABE-0002903rimKCDSforward891967892869Upstream
ABE-0002910ybjNCDSforward892957893433Upstream
ABE-0002913potFCDSforward893784894896Upstream
ABE-0002915potGCDSforward894991896124Upstream
ABE-0002917potHCDSforward896134897087Matches
ABE-0002919potICDSforward897084897929Overlaps Downstream
ABE-0002922ybjOCDSforward897989898477Downstream
ABE-0002924rlmCCDSforward898518899645Downstream
ABE-0285409repeat_regionforward899696899793Downstream
ABE-0002927artJCDScomplement899844900575Downstream
ABE-0285410repeat_regionforward900749900835Downstream
ABE-0002931artMCDScomplement900866901534Downstream
ABE-0002933artQCDScomplement901534902250Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.