Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002933 (artQ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002933 showshow history
Names
artQ JW0846 ECK0853 b0862
Product
membrane component of an ABC superfamily arginine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 901534 902250 717 239
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000346
EnteroFam0002933: Trusted threshold=642.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Apr 2008
Automated Process Approved IPR010065 (IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain) Apr 2008
Automated Process Approved IPR035906 (IPR035906 MetI-like superfamily) Jul 2018
Automated Process Approved PF00528 (PF00528 Binding-protein-dependent transport system inner membrane component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006526 arginine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0071705 nitrogen compound transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010065
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006526 arginine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010065
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010065
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010065
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010065
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name artQ Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0846 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0853 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0862 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product membrane component of an ABC superfamily arginine transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Sep 2021
Person Uncurated alternate product name arginine transport protein (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name arginine 3rd transport system permease protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name arginine transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0002933: Trusted threshold=642.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000346
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain Protein Sequence Similarity - InterPro Domain: IPR010065
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00528 Binding-protein-dependent transport system inner membrane component Protein Sequence Similarity - PFAM Model Name: PF00528
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR035906 MetI-like superfamily Protein Sequence Similarity - InterPro Domain: IPR035906
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.3 (metabolism; building block biosynthesis; amino acids; arginine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.17 (transport; substrate; arginine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002933 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11626 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AE34 Published Annotation - Swiss-Prot Accession Number: P0AE34 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AE34 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787087 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:949046 Published Annotation - Entrez Gene Database ID: 949046
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note arginine 3rd transport system permease protein; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006526 - arginine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73949.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006526 arginine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Person Uncurated GO biological process GO:0006526 arginine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0071705 nitrogen compound transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010065
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010065
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010065
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010065
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010065
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000346 artQ CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001507 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000788 artQ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000907 artQ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001384 artQ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000694 artQ CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000774 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000311 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001425 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002793 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001689 artQ_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003658 artQ CDS
Automated Process Approved Go view Dickeya chrysanthemi Ech1591 AFK-0007223 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015264 artQ CDS
Automated Process Approved Go view Dickeya parazeae Ech586 AGC-0001757 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001935 CDS
Automated Process Approved Go view Erwinia amylovora ATCC 49946 ACW-0300208 artQ CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001466 artQ CDS
Automated Process Approved Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002239 artQ CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004776 artQ CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007708 artQ CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000884 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005643 artQ CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000771 artQ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003505 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008618 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007738 artQ CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006348 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077086 artQ CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000861 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001097 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007766 artQ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008174 artQ CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000905 artQ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005381 artQ CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002084 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009724 artQ CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008774 artQ CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006040 artQ CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008163 artQ CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005862 artQ CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008994 artQ CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009605 artQ CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008602 artQ CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006810 artQ CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008847 artQ CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007559 artQ CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007399 artQ CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024916 artQ CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007105 artQ CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005645 artQ CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001126 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000830 artQ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000871 artQ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001157 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001120 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001064 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000947 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175081 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000944 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000889 artQ CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130858 artQ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005609 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000867 artQ CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000992 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002229 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000897 artQ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003821 CDS
Automated Process Approved Go view Musicola paradisiaca Ech703 AGA-0007073 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000632 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001216 CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003544 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001375 artQ CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002887 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009060 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003045 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004470 artQ CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062937 artQ CDS
Automated Process Approved Go view Pectobacterium brasiliensis 1692 AED-0001535 artQ CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0006362 artQ pseudogene
Automated Process Approved Go view Pectobacterium parmentieri WPP163 AFJ-0002027 artQ CDS
Automated Process Approved Go view Pectobacterium sp. PC1 AFL-0006516 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140384 artQ CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005438 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005104 artQ CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002147 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001046 artQ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005266 artQ CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002820 artQ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002731 artQ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007996 artQ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005388 artQ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004745 artQ CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007345 artQ CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005307 artQ CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004514 artQ CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005330 artQ CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007864 artQ CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001885 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001873 artQ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002612 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005617 artQ CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005726 artQ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005132 artQ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006155 artQ CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107108 artQ CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083721 artQ CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001043 artQ CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093219 artQ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008538 artQ CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006312 artQ CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006394 artQ CDS
Person Approved Go view Shigella boydii 227 ADV-0000869 artQ CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007880 artQ CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005723 artQ CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002768 artQ CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071867 artQ CDS
Person Approved Go view Shigella flexneri 301 ABT-0087171 artQ CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000892 artQ CDS
Person Approved Go view Shigella sonnei 046 ADD-0000910 artQ CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001174 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003650 VCA0758 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002727 artQ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001463 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004527 artQ CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001287 artQ CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001008 artQ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000592 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237167 artQ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005693 artQ CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000783 artQ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005465 artQ CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001971 artQ CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119786 artQ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006222 artQ CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004572 artQ CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003898 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008354 artQ CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005118 artQ CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032572 artQ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005266 artQ CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003161 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002815 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005927 artQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006612 artQ CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001448 artQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001751 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003214 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011014 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004511 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20245mutantTn5 InsertionRequest the StrainABE-0002933artQartQ::Tn5KAN-2 at position 320 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 896534 to 907250
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002917potHCDSforward896134897087Downstream
ABE-0002919potICDSforward897084897929Downstream
ABE-0002922ybjOCDSforward897989898477Downstream
ABE-0002924rlmCCDSforward898518899645Downstream
ABE-0285409repeat_regionforward899696899793Downstream
ABE-0002927artJCDScomplement899844900575Downstream
ABE-0285410repeat_regionforward900749900835Downstream
ABE-0002931artMCDScomplement900866901534Overlaps Downstream
ABE-0002933artQCDScomplement901534902250Matches
ABE-0002937artICDScomplement902257902988Upstream
ABE-0002939artPCDScomplement903006903734Upstream
ABE-0002941ybjPCDScomplement903952904467Upstream
ABE-0002945ybjQCDSforward904593904916Upstream
ABE-0002947amiDCDSforward904913905743Upstream
ABE-0002949ybjSCDScomplement905740906753Upstream
ABE-0002951ybjTCDScomplement906852908282Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.