Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002939 (artP) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002939 showshow history
Names
artP JW0848 ECK0855 b0864
Product
ATP-binding component of an ABC superfamily arginine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 903006 903734 729 243
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000348
EnteroFam0002939: Trusted threshold=688.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0015809 arginine transport GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Person Uncurated GO biological process GO:0006526 arginine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0015181 arginine transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Person Uncurated GO molecular function GO:0042626 ATPase-coupled transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name artP Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0848 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0855 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0864 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ATP-binding component of an ABC superfamily arginine transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Sep 2021
Person Uncurated alternate product name arginine transport protein (ABC superfamily, atp_bind and membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name ATP-binding component of 3rd arginine transport system Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name arginine transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0002939: Trusted threshold=688.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000348
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.5.1.3 (metabolism; building block biosynthesis; amino acids; arginine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.17 (transport; substrate; arginine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11624 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945489 Published Annotation - Entrez Gene Database ID: 945489
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AAF6 Published Annotation - Swiss-Prot Accession Number: P0AAF6 Jan 2006
Automated Process Approved db xref GI:1787089 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AAF6 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002939 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note ATP-binding component of 3rd arginine transport system; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006526 - arginine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73951.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 7.88
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0015809 arginine transport GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Person Uncurated GO biological process GO:0006526 arginine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Person Uncurated GO molecular function GO:0015181 arginine transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042626 ATPase-coupled transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000348 artP CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001509 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001367 artP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001189 artP CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001481 artP CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001307 artP CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000772 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000313 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001427 artP CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002791 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001691 artP CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003656 artP CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007220 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018168 artP CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001759 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001937 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300217 artP CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001468 artP CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002237 artP CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004774 artP CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007710 artP CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000886 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005641 artP CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000773 artP CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003503 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008615 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007736 artP CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006350 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077088 artP CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000863 artP CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001099 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007764 artP CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008172 artP CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000907 artP CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005383 artP CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002086 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009726 artP CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008776 artP CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006042 artP CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008165 artP CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005864 artP CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008996 artP CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009607 artP CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008604 artP CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006812 artP CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008845 artP CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007557 artP CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007401 artP CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024918 artP CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007107 artP CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005647 artP CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001124 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000832 artP CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000873 artP CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001159 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001122 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001066 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000949 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175083 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000946 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000891 artP CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130860 artP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005611 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000869 artP CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000994 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002231 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000899 artP CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003823 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007070 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000634 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001218 artP CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000664 artP CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003542 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001377 artP CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002885 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009062 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003047 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004472 artP CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062935 artP CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001538 artP CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001873 artP CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002025 artP CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006520 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140389 artP CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005106 artP CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002145 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001048 artP CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005268 artP CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002829 artP CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002740 artP CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007994 artP CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005390 artP CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004747 artP CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007347 artP CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005309 artP CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004516 artP CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005332 artP CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007866 artP CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001883 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001871 artP CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002610 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005619 artP CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005724 artP CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005134 artP CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006157 artP CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107114 artP CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083719 artP CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001045 artP CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093223 artP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008536 artP CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006310 artP CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006396 artP CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004138 CDS
Person Approved Go view Shigella boydii 227 ADV-0000871 artP CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007878 artP CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005725 artP CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002766 artP CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071869 artP CDS
Person Approved Go view Shigella flexneri 301 ABT-0087173 artP CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000894 artP CDS
Person Approved Go view Shigella sonnei 046 ADD-0000912 artP CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001172 artP CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003652 VCA0760 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002729 artP CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001461 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004536 artP CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001289 artP CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001006 artP CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000594 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237165 artP CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005695 artP CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000787 artP CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005467 artP CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001973 artP CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119796 artP CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006224 artP CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004570 artP CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008352 artP CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005116 artP CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032570 artP CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005264 artP CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003158 artP CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002812 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005925 artP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006610 artP CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001450 artP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001755 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003211 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011027 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004509 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 898006 to 908734
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002922ybjOCDSforward897989898477Downstream
ABE-0002924rlmCCDSforward898518899645Downstream
ABE-0285409repeat_regionforward899696899793Downstream
ABE-0002927artJCDScomplement899844900575Downstream
ABE-0285410repeat_regionforward900749900835Downstream
ABE-0002931artMCDScomplement900866901534Downstream
ABE-0002933artQCDScomplement901534902250Downstream
ABE-0002937artICDScomplement902257902988Downstream
ABE-0002939artPCDScomplement903006903734Matches
ABE-0002941ybjPCDScomplement903952904467Upstream
ABE-0002945ybjQCDSforward904593904916Upstream
ABE-0002947amiDCDSforward904913905743Upstream
ABE-0002949ybjSCDScomplement905740906753Upstream
ABE-0002951ybjTCDScomplement906852908282Upstream
ABE-0002954ltaECDScomplement908293909294Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.