Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002947 (amiD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002947 showshow history
Names
amiD JW0851 ECK0858 ybjR b0867
Product
N-acetylmuramoyl-L-alanine amidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 904913 905743 831 277
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000349
EnteroFam0002947: Trusted threshold=779.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002502 (IPR002502 N-acetylmuramoyl-L-alanine amidase domain) Apr 2008
Automated Process Approved IPR036365 (IPR036365 PGBD-like superfamily) Jul 2018
Automated Process Approved IPR036505 (IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily) Jul 2018
Automated Process Approved PF01510 (PF01510 N-acetylmuramoyl-L-alanine amidase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009253 peptidoglycan catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002502
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008745 N-acetylmuramoyl-L-alanine amidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002502
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name amiD Published Annotation - PubMed ID: 17526703
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Approved synonym ybjR Published Annotation - Swiss-Prot Accession Number: P75820 Aug 2002
Person Approved synonym ECK0858 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0851 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0867 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product N-acetylmuramoyl-L-alanine amidase Experimental - PubMed ID: 20036252
Reference: Escherichia coli K-12 		Feb 2021
Person Uncurated alternate product name N-acetyl-anhydromuramyl-L-alanine amidase Experimental - PubMed ID: 17526703
Reference: Escherichia coli K-12 MG1655 		Feb 2021
Automated Process Approved alternate product name 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; OM lipoprotein Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0002947: Trusted threshold=779.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000349
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR002502 N-acetylmuramoyl-L-alanine amidase domain Protein Sequence Similarity - InterPro Domain: IPR002502
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036365 PGBD-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036365
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036505
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01510 N-acetylmuramoyl-L-alanine amidase Protein Sequence Similarity - PFAM Model Name: PF01510
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.5.1.28 Published Annotation - Swiss-Prot Accession Number: P75820 Feb 2006
Person Uncurated MultiFun 1.1.5 (metabolism; carbon utilization; other compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13687 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787092 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945494 Published Annotation - Entrez Gene Database ID: 945494
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P75820 Published Annotation - Swiss-Prot Accession Number: P75820 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P75820 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002947 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative regulator; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved protein id AAC73954.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 3.24
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 6.49
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009253 peptidoglycan catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002502
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008745 N-acetylmuramoyl-L-alanine amidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002502
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001510 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000467 amiD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000250 amiD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001835 amiD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000246 amiD CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001429 amiD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002788 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001694 amiD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003653 amiD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007218 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0018164 amiD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001761 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001940 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300226 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001471 ybjR1 CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002234 ybjR CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004771 amiD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007713 amiD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000889 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005638 amiD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000776 ybjR CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003500 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008610 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007733 amiD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006353 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077091 amiD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000866 amiD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001102 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007761 amiD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008168 amiD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000910 ybjR CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005386 amiD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002090 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009730 amiD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008780 amiD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006046 amiD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008169 amiD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005868 amiD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009000 amiD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009611 amiD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008608 amiD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006816 amiD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008841 amiD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007553 amiD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007405 amiD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024925 ybjR CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007110 amiD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005650 amiD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001121 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000835 ybjR CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000876 ybjR CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001162 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001125 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001069 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000952 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175086 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000949 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000895 amiD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130866 ybjR CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005616 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000872 ybjR CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000996 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000902 ybjR CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003826 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007067 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000637 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001221 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000667 ybjR CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003539 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001380 ybjR CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002882 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009064 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003050 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004476 ybjR CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062933 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001581 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000694 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002023 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006522 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143251 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000340 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005109 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002136 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001052 ybjR CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005271 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002838 ybjR CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002749 ybjR CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007991 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005393 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004750 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007350 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005312 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004519 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005335 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007869 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001880 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001868 ybjR CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002607 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005622 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005721 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005137 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006160 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107122 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083716 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001048 ybjR CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093340 ybjR CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008533 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006307 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006399 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004134 CDS
Person Approved Go view Shigella boydii 227 ADV-0000873 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007875 amiD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005730 amiD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002755 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071874 CDS
Person Approved Go view Shigella flexneri 301 ABT-0087177 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000901 CDS
Person Approved Go view Shigella sonnei 046 ADD-0000916 ybjR CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001169 amiD CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004820 ybjR CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000672 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005536 b0867 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000830 b0867 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000155 b0867 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002176 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238479 ampD2 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006767 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002183 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004952 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001694 CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120990 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004850 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005633 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002593 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007752 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008087 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031573 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008628 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002307 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002076 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008060 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005651 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002453 ybjR CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002909 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002110 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011041 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004506 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22137mutantTn5 InsertionRequest the StrainABE-0002947amiDb0867::Tn5KAN-I-SceI at position 458 in Minus orientation ,+ pKD465Blattner Laboratory
FB22298mutantTn5 InsertionRequest the StrainABE-0002947amiDb0867::Tn5KAN-I-SceI at position 458 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 899913 to 910743
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002927artJCDScomplement899844900575Upstream
ABE-0285410repeat_regionforward900749900835Upstream
ABE-0002931artMCDScomplement900866901534Upstream
ABE-0002933artQCDScomplement901534902250Upstream
ABE-0002937artICDScomplement902257902988Upstream
ABE-0002939artPCDScomplement903006903734Upstream
ABE-0002941ybjPCDScomplement903952904467Upstream
ABE-0002945ybjQCDSforward904593904916Overlaps Upstream
ABE-0002947amiDCDSforward904913905743Matches
ABE-0002949ybjSCDScomplement905740906753Overlaps Downstream
ABE-0002951ybjTCDScomplement906852908282Downstream
ABE-0002954ltaECDScomplement908293909294Downstream
ABE-0002958poxBCDScomplement909331911049Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.