Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002954 (ltaE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002954 showshow history
Names
ltaE JW0854 ECK0861 ybjU ltaA b0870
Product
low-specificity L-threonine aldolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 908293 909294 1002 334
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Apr 2008
Automated Process Approved IPR015422 (IPR015422 Pyridoxal phosphate-dependent transferase, small domain) Apr 2008
Automated Process Approved IPR001597 (IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase) Apr 2008
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Apr 2008
Automated Process Approved IPR023603 (IPR023603 Threonine aldolase) Jul 2018
Automated Process Approved PF01212 (PF01212 Beta-eliminating lyase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001597
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006545 glycine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001597
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015422
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015422
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ltaE Experimental - PubMed ID: 9692922
Reference: Escherichia coli 		Aug 2002
Person Approved synonym ltaA Published Annotation - Database Name: GenProtEC Jul 2002
Person Approved synonym JW0854 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ybjU Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK0861 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0870 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product low-specificity L-threonine aldolase Experimental - PubMed ID: 9692922
Reference: Escherichia coli 		Aug 2002
Person Uncurated alternate product name PLP-dependent L-allo-threonine aldolase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2022
Protein Family
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase Protein Sequence Similarity - InterPro Domain: IPR001597
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015422 Pyridoxal phosphate-dependent transferase, small domain Protein Sequence Similarity - InterPro Domain: IPR015422
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR023603 Threonine aldolase Protein Sequence Similarity - InterPro Domain: IPR023603
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01212 Beta-eliminating lyase Protein Sequence Similarity - PFAM Model Name: PF01212
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 4.-.-.- Published Annotation - Database Name: EC2GO: GO:0016829
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 4.1.2.5 Published Annotation - Swiss-Prot Accession Number: P75823 Feb 2006
Person Uncurated MultiFun 1.5.1.10 (metabolism; building block biosynthesis; amino acids; glycine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13690 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:944955 Published Annotation - Entrez Gene Database ID: 944955
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P75823 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002954 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787095 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P75823 Published Annotation - Swiss-Prot Accession Number: P75823 Jan 2005
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006545 - glycine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73957.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001597
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006545 glycine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001597
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015422
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015422
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0004603 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001978 ltaE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002043 ltaE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001807 ltaE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002117 ltaE CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001432 ltaE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002785 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001697 ltaE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003650 ltaE CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001962 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300235 ltaE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001472 ltaE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004768 ltaE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007716 ltaE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000892 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005635 ltaE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000778 ybjU CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003497 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008607 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007730 ltaE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006356 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077094 ltaE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000869 ltaE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001105 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007758 ltaE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008165 ltaE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000913 ltaE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005389 ltaE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002093 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009733 ltaE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008783 ltaE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006049 ltaE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008172 ltaE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005871 ltaE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009003 ltaE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009614 ltaE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008611 ltaE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006819 ltaE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008838 ltaE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007550 ltaE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007408 ltaE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024928 ltaE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007113 ltaE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005653 ltaE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001118 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000838 ltaE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000879 ltaE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001165 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001128 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001072 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000955 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175089 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000952 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000898 ltaE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130869 ltaE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005619 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000875 ybjU CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000999 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002240 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000905 ltaE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003847 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000638 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001222 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000668 ltaE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003538 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001381 ltaE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002881 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009065 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003051 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004477 ltaA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001875 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005112 ltaE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002133 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001055 ltaA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005274 ltaE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002847 ltaA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002757 ltaA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007988 ltaE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005396 ltaE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004753 ltaE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007353 ltaE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005315 ltaE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004522 ltaE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005338 ltaE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007872 ltaE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001877 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001865 ybjU CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002603 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005625 ltaE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005718 ltaE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005140 ltaE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006163 ltaE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107127 ybjU CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083713 ybjU CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001051 ltaA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093348 ltaA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008530 ltaE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006304 ltaE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006402 ltaE CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004130 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266962 ybjU CDS
Person Approved Go view Shigella boydii 227 ADV-0000876 ybjU CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007872 ltaE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005733 ltaE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002752 ybjU CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071877 ybjU CDS
Person Approved Go view Shigella flexneri 301 ABT-0087180 ybjU CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000904 ybjU CDS
Person Approved Go view Shigella sonnei 046 ADD-0000919 ltaE CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001165 ltaE CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003658 VCA0765 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001456 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004551 ltaA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001295 ltaA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001002 ltaA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000599 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237158 ltaA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005700 ltaE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000795 ltaA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005472 ltaE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001978 ltaA CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119807 ltaA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006229 ltaE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004565 ltaE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000567 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008347 ltaE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005111 ltaE CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032564 ltaA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005259 ltaE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003150 ltaA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002804 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005920 ltaE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006605 ltaE CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001455 ltaA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001762 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003204 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011058 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004503 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22139mutantTn5 InsertionRequest the StrainABE-0002954ltaEybjU::Tn5KAN-I-SceI at position 452 in Minus orientation ,+ pKD465Blattner Laboratory
FB22300mutantTn5 InsertionRequest the StrainABE-0002954ltaEybjU::Tn5KAN-I-SceI at position 452 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 903293 to 914294
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002939artPCDScomplement903006903734Downstream
ABE-0002941ybjPCDScomplement903952904467Downstream
ABE-0002945ybjQCDSforward904593904916Downstream
ABE-0002947amiDCDSforward904913905743Downstream
ABE-0002949ybjSCDScomplement905740906753Downstream
ABE-0002951ybjTCDScomplement906852908282Downstream
ABE-0002954ltaECDScomplement908293909294Matches
ABE-0002958poxBCDScomplement909331911049Upstream
ABE-0285411repeat_regionforward911147911172Upstream
ABE-0002960hcrCDScomplement911182912150Upstream
ABE-0002962hcpCDScomplement912162913814Upstream
ABE-0002966lysOCDScomplement913958914857Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.