Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002958 (poxB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002958 showshow history
Names
poxB JW0855 ECK0862 b0871
Product
pyruvate oxidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 909331 911049 1719 573
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012001 (IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain) Apr 2008
Automated Process Approved IPR012000 (IPR012000 Thiamine pyrophosphate enzyme, central domain) Apr 2008
Automated Process Approved IPR011766 (IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding) Apr 2008
Automated Process Approved IPR000399 (IPR000399 TPP-binding enzyme, conserved site) Apr 2008
Automated Process Approved IPR012217 (IPR012217 (DEPRECATED) Pyruvate dehydrogenase PoxB) Apr 2008
Automated Process Approved IPR029035 (IPR029035 DHS-like NAD/FAD-binding domain superfamily) Jul 2018
Automated Process Approved IPR029061 (IPR029061 Thiamin diphosphate-binding fold) Jul 2018
Automated Process Approved PF02776 (PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain) Jul 2018
Automated Process Approved PF00205 (PF00205 Thiamine pyrophosphate enzyme, central domain) Jul 2018
Automated Process Approved PF02775 (PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0042867 pyruvate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000399
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011766
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0030976 thiamine pyrophosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012001
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012000
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name poxB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW0855 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0862 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0871 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product pyruvate oxidase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name pyruvate dehydrogenase (pyruvate oxidase), thiamin-dependent, FAD-binding Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name pyruvate dehydrogenase/oxidase: FAD- and thiamine PPi-binding Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR012000 Thiamine pyrophosphate enzyme, central domain Protein Sequence Similarity - InterPro Domain: IPR012000
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain Protein Sequence Similarity - InterPro Domain: IPR012001
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Protein Sequence Similarity - PFAM Model Name: PF02776
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Protein Sequence Similarity - PFAM Model Name: PF02775
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029035 DHS-like NAD/FAD-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR029035
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029061 Thiamin diphosphate-binding fold Protein Sequence Similarity - InterPro Domain: IPR029061
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000399 TPP-binding enzyme, conserved site Protein Sequence Similarity - InterPro Domain: IPR000399
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012217 (DEPRECATED) Pyruvate dehydrogenase PoxB Protein Sequence Similarity - InterPro Domain: IPR012217
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding Protein Sequence Similarity - InterPro Domain: IPR011766
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00205 Thiamine pyrophosphate enzyme, central domain Protein Sequence Similarity - PFAM Model Name: PF00205
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Approved EC number 1.2.5.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated MultiFun 1.7.28 (metabolism; central intermediary metabolism; pyruvate oxidation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946132 Published Annotation - Entrez Gene Database ID: 946132
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P07003 Published Annotation - Swiss-Prot Accession Number: P07003 Jan 2005
Automated Process Approved db xref GI:1787096 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P07003 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002958 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10754 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note pyruvate oxidase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0042867 - pyruvate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73958.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0042867 pyruvate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012000
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000399
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011766
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030976 thiamine pyrophosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012001
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0004230 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002047 poxB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002009 poxB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001806 poxB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002048 poxB CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002287 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001433 poxB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002784 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001698 poxB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003649 poxB CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001963 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300237 poxB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001473 poxB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002233 poxB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004767 poxB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007717 poxB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000893 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005634 poxB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000779 poxB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003496 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008606 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007729 poxB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006357 poxB pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077095 poxB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000870 poxB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001106 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007757 poxB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008164 poxB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000914 poxB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005390 poxB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002094 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009734 poxB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008784 poxB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006050 poxB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008173 poxB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005872 poxB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009004 poxB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009615 poxB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008612 poxB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006820 poxB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008837 poxB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007549 poxB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007409 poxB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024929 poxB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007114 poxB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005654 poxB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001117 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000839 poxB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000880 poxB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001166 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001129 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001073 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000956 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000953 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000899 poxB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130870 poxB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005620 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000876 poxB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001000 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002241 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000906 poxB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003848 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000639 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001223 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000669 poxB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003537 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001382 poxB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002880 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009066 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003052 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004478 poxb1 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002555 poxB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005113 poxB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002132 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001056 poxB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005275 poxB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002849 poxB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002759 poxB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007987 poxB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005397 poxB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004754 poxB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007354 poxB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005316 poxB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004523 poxB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005339 poxB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007873 poxB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001876 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001864 poxB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002602 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005626 poxB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005717 poxB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005141 poxB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006164 poxB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107128 poxB CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083712 poxB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001052 poxB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093351 poxB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008529 poxB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006303 poxB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006403 poxB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004129 CDS
Person Approved Go view Shigella boydii 227 ADV-0000877 poxB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007871 poxB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005734 poxB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002751 poxB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071878 poxB CDS
Person Approved Go view Shigella flexneri 301 ABT-0087181 poxB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000905 poxB CDS
Person Approved Go view Shigella sonnei 046 ADD-0000920 poxB CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001164 poxB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001454 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004553 poxB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001297 poxB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001000 poxB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000601 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237156 poxB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005701 poxB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000797 poxB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005473 poxB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001979 poxB CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119808 poxB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006230 poxB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004564 poxB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000566 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008346 poxB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005110 poxB CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032562 poxB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005258 poxB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003148 poxB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002803 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005919 poxB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006604 poxB CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001456 poxB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001763 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003202 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011064 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004502 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB23664mutantTn5 InsertionRequest the StrainABE-0002958poxBpoxB::Tn5KAN-I-SceI at position 1131 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 904331 to 916049
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002941ybjPCDScomplement903952904467Downstream
ABE-0002945ybjQCDSforward904593904916Downstream
ABE-0002947amiDCDSforward904913905743Downstream
ABE-0002949ybjSCDScomplement905740906753Downstream
ABE-0002951ybjTCDScomplement906852908282Downstream
ABE-0002954ltaECDScomplement908293909294Downstream
ABE-0002958poxBCDScomplement909331911049Matches
ABE-0285411repeat_regionforward911147911172Upstream
ABE-0002960hcrCDScomplement911182912150Upstream
ABE-0002962hcpCDScomplement912162913814Upstream
ABE-0002966lysOCDScomplement913958914857Upstream
ABE-0002976aqpZCDScomplement915352916047Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.