Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003015 (cydD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003015 showshow history
Names
cydD htrD JW0870 ECK0878 b0887
Product
cysteine transporter subunit of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 929196 930962 1767 589
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000361
EnteroFam0003015: Trusted threshold=1463.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR011527 (IPR011527 ABC transporter type 1, transmembrane domain) Apr 2008
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR014216 (IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR001140 (IPR001140 (DEPRECATED) ABC transporter, transmembrane domain) Apr 2008
Automated Process Approved IPR036640 (IPR036640 ABC transporter type 1, transmembrane domain superfamily) Jul 2018
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Automated Process Approved PF00664 (PF00664 ABC transporter transmembrane region) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011527
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0042883 cysteine transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014216
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011527
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011527
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014216
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011527
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0042626 ATPase-coupled transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Approved GO molecular function GO:0042626 ATPase-coupled transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011527
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name cydD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0870 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0878 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym htrD Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b0887 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product cysteine transporter subunit of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved alternate product name ATP-binding component of cytochrome-related transport, Zn sensitive Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name cytochrome-related transport protein (ABC superfamily, membrane (N-terminal), atp_bind (C-terminal)) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name fused glutathione, cysteine exporter subunits of ABC superfamily: membrane component/ATP-binding component Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0003015: Trusted threshold=1463.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000361
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR011527 ABC transporter type 1, transmembrane domain Protein Sequence Similarity - InterPro Domain: IPR011527
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00664 ABC transporter transmembrane region Protein Sequence Similarity - PFAM Model Name: PF00664
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001140 (DEPRECATED) ABC transporter, transmembrane domain Protein Sequence Similarity - InterPro Domain: IPR001140
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036640 ABC transporter type 1, transmembrane domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036640
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD Protein Sequence Similarity - InterPro Domain: IPR014216
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 4.3.A.1.am (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, ATP binding and membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11405 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787113 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:949052 Published Annotation - Entrez Gene Database ID: 949052
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P29018 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P29018 Published Annotation - Swiss-Prot Accession Number: P29018 Jan 2005
Automated Process Approved db xref ASAP:ABE-0003015 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note ATP-binding component of cytochrome-related transport, Zn sensitive; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73973.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0042883 cysteine transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014216
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011527
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011527
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011527
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Uncurated GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014216
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0042626 ATPase-coupled transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011527
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011527
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0042626 ATPase-coupled transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000361 cydD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001518 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001555 cydD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001337 cydD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000723 cydD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001124 cydD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000759 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000326 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001449 cydD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002766 cydD CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001717 cydD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002219 cydD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007205 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020036 cydD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001772 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300271 cydD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001482 cydD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002226 cydD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004749 cydD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007957 cydD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000909 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005601 cydD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000800 cydD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003474 cydD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008585 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007991 cydD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007882 CydD CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077116 cydD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000887 cydD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001122 cydD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010652 cydD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008464 cydD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000930 cydD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005406 cydD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002189 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009751 cydD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008800 cydD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010302 cydD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005889 cydD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010434 cydD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008907 cydD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009296 cydD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009487 cydD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025053 cydD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007147 cydD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005670 cydD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001097 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000853 cydD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000896 cydD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001182 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001145 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001215 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000977 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175114 pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0000970 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002233 cydD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130886 cydD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005650 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000904 cydD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001012 cydD CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002254 cydD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000921 cydD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003865 cydD CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007054 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000648 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001232 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000679 cydD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003528 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001391 cydD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002871 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009075 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003061 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288143 cydD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004487 cydD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062918 cydD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001534 cydD CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003962 cydD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002010 cydD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006536 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140408 cydD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005140 cydD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002108 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001079 cydD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005295 cydD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002913 cydD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002820 cydD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007966 cydD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005420 cydD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004777 cydD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007373 cydD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005359 cydD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004568 cydD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005359 cydD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007894 cydD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001853 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001841 cydD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002578 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005647 cydD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005698 cydD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005160 cydD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006183 cydD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107168 cydD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083691 cydD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001081 cydD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093409 cydD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008507 cydD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009074 cydD CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004115 cydD CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267422 cydD CDS
Person Approved Go view Shigella boydii 227 ADV-0000893 cydD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007853 cydD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002732 cydD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071900 cydD CDS
Person Approved Go view Shigella flexneri 301 ABT-0087202 cydD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000925 cydD CDS
Person Approved Go view Shigella sonnei 046 ADD-0000955 cydD CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001146 cydD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001249 VC1181 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002748 cydD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001439 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004609 cydD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001311 cydD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000986 cydD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000616 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237107 cydD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005719 cydD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000814 cydD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005492 cydD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001994 cydD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119868 cydD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006249 cydD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004545 cydD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002684 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008327 cydD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005091 cydD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032543 cydD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005239 cydD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003130 cydD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002784 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005900 cydD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006585 cydD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001470 cydD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001779 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003185 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011159 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004486 cydD CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 924196 to 935962
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003001clpACDSforward923264925540Downstream
ABE-0003003serWtRNAcomplement925884925971Downstream
ABE-0003005infACDScomplement926225926443Downstream
ABE-0003009aatCDScomplement926728927432Downstream
ABE-0003012cydCCDScomplement927474929195Downstream
ABE-0003015cydDCDScomplement929196930962Matches
ABE-0003018trxBCDScomplement931085932050Upstream
ABE-0003023lrpCDSforward932595933089Upstream
ABE-0003027ftsKCDSforward933224937213Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.