Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003044 (dmsA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003044 showshow history
Names
dmsA JW5118 ECK0885 b0894
Product
dimethyl sulfoxide reductase subunit A
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 940959 943403 2445 815
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR009010 (IPR009010 Aspartate decarboxylase-like domain superfamily) Apr 2008
Automated Process Approved IPR006963 (IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain) Apr 2008
Automated Process Approved IPR006656 (IPR006656 Molybdopterin oxidoreductase) Apr 2008
Automated Process Approved IPR006657 (IPR006657 Molybdopterin dinucleotide-binding domain) Apr 2008
Automated Process Approved IPR006655 (IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site) Apr 2008
Automated Process Approved IPR006311 (IPR006311 Twin-arginine translocation pathway, signal sequence) Apr 2008
Automated Process Approved IPR011888 (IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE) Apr 2008
Automated Process Approved IPR019546 (IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal) Jul 2018
Automated Process Approved PF01568 (PF01568 Molydopterin dinucleotide binding domain) Jul 2018
Automated Process Approved PF00384 (PF00384 Molybdopterin oxidoreductase) Jul 2018
Automated Process Approved PF04879 (PF04879 Molybdopterin oxidoreductase Fe4S4 domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006657, IPR006656, IPR006963, IPR011888
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011888
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0043546 molybdopterin cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006657
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0009389 dimethyl sulfoxide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011888
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006963
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030151 molybdenum ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006657
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dmsA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW5118 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0885 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0894 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product dimethyl sulfoxide reductase subunit A Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name anaerobic dimethyl sulfoxide reductase subunit A Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name anaerobic dimethyl sulfoxide (DMSO) reductase, subunit A Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family PF01568 Molydopterin dinucleotide binding domain Protein Sequence Similarity - PFAM Model Name: PF01568
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR009010 Aspartate decarboxylase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR009010
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF04879 Molybdopterin oxidoreductase Fe4S4 domain Protein Sequence Similarity - PFAM Model Name: PF04879
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00384 Molybdopterin oxidoreductase Protein Sequence Similarity - PFAM Model Name: PF00384
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006311 Twin-arginine translocation pathway, signal sequence Protein Sequence Similarity - InterPro Domain: IPR006311
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Protein Sequence Similarity - InterPro Domain: IPR019546
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site Protein Sequence Similarity - InterPro Domain: IPR006655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE Protein Sequence Similarity - InterPro Domain: IPR011888
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain Protein Sequence Similarity - InterPro Domain: IPR006963
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006656 Molybdopterin oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR006656
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006657 Molybdopterin dinucleotide-binding domain Protein Sequence Similarity - InterPro Domain: IPR006657
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.8.99.- Published Annotation - Swiss-Prot Accession Number: P18775 Feb 2006
Person Uncurated MultiFun 1.4.2 (metabolism; energy production/transport; electron acceptor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated comment start coordinate corrected Experimental - PubMed ID: 10801884
Reference: Escherichia coli 		Apr 2005
Person Approved db xref UniProtKB:P18775 Published Annotation - Swiss-Prot Accession Number: P18775 Jan 2005
Automated Process Approved db xref GeneID:945508 Published Annotation - Entrez Gene Database ID: 945508
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:87081797 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003044 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P18775 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10232 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Anaerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note anaerobic dimethyl sulfoxide reductase subunit A; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73980.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 9.76
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006657, IPR006656, IPR006963, IPR011888
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0043546 molybdopterin cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006657
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011888
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0009389 dimethyl sulfoxide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011888
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030151 molybdenum ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006657
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006963
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078092 ynfE CDS
Person Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078093 ynfF CDS
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001757 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000011 dmsA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000013 ynfE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0004112 ynfE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000004 dmsA CDS
Paralog
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005302 ynfE CDS
Person Approved Go view Escherichia coli K-12 MG1655 ABE-0005307 ynfF CDS
Ortholog
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001725 dmsA_2 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002227 dmsA_2 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000916 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000807 dmsA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003466 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008575 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077123 dmsA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000896 dmsA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001131 CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005415 dmsA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005896 dmsA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025060 dmsA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007155 dmsA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005678 dmsA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001276 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000860 dmsA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000903 dmsA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001190 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001153 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001207 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000984 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175121 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000977 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002225 dmsA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130893 dmsA CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000970 dmsA CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001086 dmsA CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001834 dmsA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107182 dmsA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083684 dmsA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093441 dmsA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264995 dmaA-1 CDS
Person Approved Go view Shigella boydii 227 ADV-0000900 dmsA pseudogene
Person Approved Go view Shigella dysenteriae 197 ADU-0002725 dmsA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071908 dmsA CDS
Person Approved Go view Shigella flexneri 301 ABT-0087209 dmsA pseudogene
Person Approved Go view Shigella sonnei 046 ADD-0000962 dmsA CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235020 dmsA1 CDS
Person Approved Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003380 dmsA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126522 dmsA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030502 dmsA CDS
Person Approved Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000933 dmsA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000847 dmsA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 935959 to 948403
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003027ftsKCDSforward933224937213Upstream
ABE-0285412repeat_regionforward937224937259Upstream
ABE-0003031lolACDSforward937372937983Upstream
ABE-0003034rarACDSforward937994939337Upstream
ABE-0003038serSCDSforward939428940720Upstream
ABE-0003044dmsACDSforward940959943403Matches
ABE-0003046dmsBCDSforward943414944031Downstream
ABE-0003048dmsCCDSforward944033944896Downstream
ABE-0003050ycaCCDScomplement944931945557Downstream
ABE-0003056ycaDCDSforward945871947019Downstream
ABE-0003058ycaMCDSforward947229948659Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.