Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003048 (dmsC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003048 showshow history
Names
dmsC JW0879 ECK0887 b0896
Product
dimethyl sulfoxide reductase subunit C
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 944033 944896 864 288
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR007059 (IPR007059 DMSO reductase anchor subunit (DmsC)) Apr 2008
Automated Process Approved PF04976 (PF04976 DMSO reductase anchor subunit (DmsC)) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0019645 anaerobic electron transport chain GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dmsC Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW0879 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0887 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0896 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product dimethyl sulfoxide reductase subunit C Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name anaerobic dimethyl sulfoxide reductase subunit C Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name anaerobic dimethyl sulfoxide (DMSO) reductase, subunit C Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family PF04976 DMSO reductase anchor subunit (DmsC) Protein Sequence Similarity - PFAM Model Name: PF04976
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR007059 DMSO reductase anchor subunit (DmsC) Protein Sequence Similarity - InterPro Domain: IPR007059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.2 (metabolism; energy production/transport; electron acceptor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003048 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10234 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P18777 Published Annotation - Swiss-Prot Accession Number: P18777 Jan 2005
Automated Process Approved db xref GeneID:945502 Published Annotation - Entrez Gene Database ID: 945502
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1787123 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P18777 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Anaerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note anaerobic dimethyl sulfoxide reductase subunit C; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73982.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0019645 anaerobic electron transport chain GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005326 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002342 dmsC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002585 dmsC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0004960 ynfH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002634 dmsC CDS
Paralog
Person Approved Go view Escherichia coli K-12 MG1655 ABE-0005311 ynfH CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001460 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002756 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001727 dmsC_2 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002229 dmsC_2 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001991 CDS
Automated Process Approved Go view Escherichia albertii TW07627 AFX-0004691 dmsC1 CDS
Automated Process Approved Go view Escherichia coli 101-1 (EAEC) BAB-0007967 dmsC1 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000918 CDS
Automated Process Approved Go view Escherichia coli 53638 (EIEC) ADP-0005591 dmsC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000809 dmsC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003464 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008573 CDS
Automated Process Approved Go view Escherichia coli B171 (EPEC) ADN-0007981 dmsC1 CDS
Automated Process Approved Go view Escherichia coli B7A (ETEC) ADK-0007892 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077125 dmsC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000898 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001133 CDS
Automated Process Approved Go view Escherichia coli E110019 (EPEC) ADM-0009413 dmsC1 CDS
Automated Process Approved Go view Escherichia coli E22 (EPEC) ADL-0008454 dmsC1 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000939 dmsC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005418 dmsC1 CDS
Automated Process Approved Go view Escherichia coli EC4024 (EHEC) BBI-0002200 CDS
Automated Process Approved Go view Escherichia coli EC4042 (EHEC) BBA-0009761 dmsC1 CDS
Automated Process Approved Go view Escherichia coli EC4045 (EHEC) BBB-0008810 dmsC1 CDS
Automated Process Approved Go view Escherichia coli EC4076 (EHEC) BAZ-0010313 dmsC1 CDS
Automated Process Approved Go view Escherichia coli EC4113 (EHEC) BAY-0010241 dmsC1 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005898 dmsC1 CDS
Automated Process Approved Go view Escherichia coli EC4196 (EHEC) BAX-0008843 dmsC1 CDS
Automated Process Approved Go view Escherichia coli EC4206 (EHEC) BAW-0009649 dmsC1 CDS
Automated Process Approved Go view Escherichia coli EC4401 (EHEC) BAV-0008917 dmsC1 CDS
Automated Process Approved Go view Escherichia coli EC4486 (EHEC) BAU-0009306 dmsC1 CDS
Automated Process Approved Go view Escherichia coli EC4501 (EHEC) BAT-0008554 dmsC1 CDS
Automated Process Approved Go view Escherichia coli EC508 (EHEC) BBJ-0009110 dmsC1 CDS
Automated Process Approved Go view Escherichia coli EC869 (EHEC) BBC-0007631 dmsC1 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025062 dmsC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007157 dmsC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005680 dmsC1 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001274 CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0000862 dmsC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000905 dmsC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001192 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001155 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001205 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000986 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175123 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000979 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002223 dmsC1 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130895 dmsC CDS
Automated Process Approved Go view Escherichia coli TW14588 (EHEC) BBK-0005661 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000972 dmsC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002263 CDS
Person Approved Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000930 dmsC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003876 CDS
Automated Process Approved Go view Salmonella Agona SL483 BBX-0005149 dmsC1 CDS
Automated Process Approved Go view Salmonella Arizonae CDC 346-86 BCD-0002099 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001093 CDS
Automated Process Approved Go view Salmonella Dublin CT_02021853 BCB-0005304 dmsC1 CDS
Automated Process Approved Go view Salmonella Enteritidis P125109 BCF-0002957 dmsC CDS
Automated Process Approved Go view Salmonella Gallinarum 287/91 BCG-0002861 dmsC CDS
Automated Process Approved Go view Salmonella Hadar RI_05P066 BBT-0007957 dmsC1 CDS
Automated Process Approved Go view Salmonella Heidelberg SL476 BBV-0005429 dmsC1 CDS
Automated Process Approved Go view Salmonella Heidelberg SL486 BBW-0004787 dmsC1 CDS
Automated Process Approved Go view Salmonella Javiana GA_MM04042433 BCA-0007383 dmsC1 CDS
Automated Process Approved Go view Salmonella Kentucky CDC 191 BBZ-0005368 dmsC1 CDS
Automated Process Approved Go view Salmonella Kentucky CVM29188 BBP-0004577 dmsC1 CDS
Automated Process Approved Go view Salmonella Newport SL254 BBQ-0005369 dmsC CDS
Automated Process Approved Go view Salmonella Newport SL317 BBR-0007904 dmsC1 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004455 dmsC pseudogene
Automated Process Approved Go view Salmonella Paratyphi B SPB7 BCC-0002568 CDS
Automated Process Approved Go view Salmonella Saintpaul SARA23 BBN-0005656 dmsC1 CDS
Automated Process Approved Go view Salmonella Saintpaul SARA29 BBM-0005689 dmsC1 CDS
Automated Process Approved Go view Salmonella Schwarzengrund CVM19633 BBO-0005169 dmsC1 CDS
Automated Process Approved Go view Salmonella Schwarzengrund SL480 BBY-0006192 dmsC1 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107189 dmsC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083682 dmsC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001093 dmsC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093447 dmsC CDS
Automated Process Approved Go view Salmonella Virchow SL491 BBS-0008498 dmsC1 CDS
Automated Process Approved Go view Salmonella Weltevreden SL484 BBU-0009065 dmsC1 CDS
Automated Process Approved Go view Salmonella enterica CVM23701 BBL-0008752 dmsC CDS
Person Approved Go view Shigella boydii 227 ADV-0001073 dmsC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007843 dmsC1 CDS
Automated Process Approved Go view Shigella dysenteriae 1012 BAA-0008155 dmsC1 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002723 dmsC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071910 dmsC CDS
Person Approved Go view Shigella flexneri 301 ABT-0087211 dmsC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000934 dmsC CDS
Person Approved Go view Shigella sonnei 046 ADD-0000964 dmsC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001048 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000019 dmsC1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000584 dmsC CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235022 dmsC1 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005026 dmsC CDS
Person Approved Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003383 dmsC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007109 dmsC CDS
Person Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004028 dmsC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126507 dmsC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006489 dmsC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005981 dmsC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003768 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005960 dmsC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004315 dmsC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030504 dmsC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007423 dmsC CDS
Person Approved Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000936 dmsC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003633 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004810 dmsC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007274 dmsC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000849 dmsC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000991 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004028 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011213 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004476 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22792mutantTn5 InsertionRequest the StrainABE-0003048dmsCdmsC::Tn5(KAN-2) at position 223 in Minus orientation ,- pKD46 0Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 939033 to 949896
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003034rarACDSforward937994939337Upstream
ABE-0003038serSCDSforward939428940720Upstream
ABE-0003044dmsACDSforward940959943403Upstream
ABE-0003046dmsBCDSforward943414944031Upstream
ABE-0003048dmsCCDSforward944033944896Matches
ABE-0003050ycaCCDScomplement944931945557Downstream
ABE-0003056ycaDCDSforward945871947019Downstream
ABE-0003058ycaMCDSforward947229948659Downstream
ABE-0003060ycaNCDScomplement948660949568Downstream
ABE-0003065ycaKCDSforward949668950258Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.