Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003073 (focA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003073 showshow history
Names
focA ycaE JW0887 ECK0895 b0904
Product
formate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 953609 954466 858 286
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000370
EnteroFam0003073: Trusted threshold=796.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000292 (IPR000292 Formate/nitrite transporter) Apr 2008
Automated Process Approved IPR023999 (IPR023999 Formate transporter FocA, putative) Jul 2018
Automated Process Approved PF01226 (PF01226 Formate/nitrite transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0015724 formate transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR023999
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000292
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000292
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR023999
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000292
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0015499 formate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR023999
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000292
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000292
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name focA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0895 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0887 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ycaE Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b0904 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product formate transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name probable formate transporter (formate channel 1) Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name formate transport protein (formate channel 1) (FNT family) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name formate channel Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0003073: Trusted threshold=796.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000370
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF01226 Formate/nitrite transporter Protein Sequence Similarity - PFAM Model Name: PF01226
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR023999 Formate transporter FocA, putative Protein Sequence Similarity - InterPro Domain: IPR023999
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000292 Formate/nitrite transporter Protein Sequence Similarity - InterPro Domain: IPR000292
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 4.2.A.44 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Formate-Nitrite Transporter (FNT) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.59 (transport; substrate; formate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003073 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11258 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AC23 Published Annotation - Swiss-Prot Accession Number: P0AC23 Jan 2006
Automated Process Approved db xref GI:1787132 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945513 Published Annotation - Entrez Gene Database ID: 945513
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AC23 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative transport; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note probable formate transporter (formate channel 1); GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73990.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0015724 formate transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR023999
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000292
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000292
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR023999
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000292
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0015499 formate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR023999
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000292
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000292
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000370 focA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001526 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001510 focA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001417 focA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001889 focA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001382 focA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000744 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000342 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001464 focA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002751 focA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001732 focA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002236 focA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007181 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019603 focA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001791 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001996 focA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002216 focA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004638 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007976 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000923 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005578 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000852 focA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 11775 [T] AMC-0003458 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008564 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007972 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007221 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077134 focA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000907 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001142 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009404 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008445 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000944 focA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005446 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002208 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009768 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008817 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010320 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010233 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005905 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008836 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009657 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008924 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009313 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008547 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009103 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007638 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025068 focA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007163 focA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005689 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001269 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000870 focA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000913 focA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001200 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001163 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001197 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000993 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175130 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000988 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002216 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130901 focA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005669 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000978 focA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001028 focA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002271 focA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000934 focA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003881 focA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007029 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000658 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001242 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000689 focA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003517 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001401 focA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002861 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009085 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003071 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288154 focA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004498 focA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062860 focA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001495 focA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001865 focA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001996 focA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006554 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140446 focA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005157 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002090 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001102 focA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005311 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002981 focA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002883 focA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007950 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005436 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004794 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007390 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005375 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004584 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005376 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007911 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001836 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001824 focA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002557 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005664 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005682 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005176 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006198 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107200 focA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083674 focA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001102 focA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093465 focA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008491 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009057 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008759 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004104 focA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266521 CDS
Person Approved Go view Shigella boydii 227 ADV-0002429 focA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007835 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007157 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002713 focA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071991 focA CDS
Person Approved Go view Shigella flexneri 301 ABT-0087252 focA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000957 focA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000973 focA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001135 focA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001768 VC1695 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002777 focA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001429 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004653 focA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001322 focA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000976 focA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000626 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237067 focA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006060 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000830 focA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005504 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002004 focA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119923 focA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006261 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004533 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008315 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005076 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032528 focA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005227 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003113 focA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002770 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005887 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006573 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001481 focA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001795 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003170 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011232 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004471 focA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20248mutantTn5 InsertionRequest the StrainABE-0003073focAfocA::Tn5KAN-2 at position 349 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 948609 to 959466
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003058ycaMCDSforward947229948659Downstream
ABE-0003060ycaNCDScomplement948660949568Downstream
ABE-0003065ycaKCDSforward949668950258Downstream
ABE-0003068pflACDScomplement950340951080Downstream
ABE-0003071pflBCDScomplement951272953554Downstream
ABE-0003073focACDScomplement953609954466Matches
ABE-0003081ycaOCDScomplement954872956632Upstream
ABE-0003089ycaPCDSforward956762957454Upstream
ABE-0003093serCCDSforward957653958741Upstream
ABE-0003095aroACDSforward958812960095Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.