Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003093 (serC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003093 showshow history
Names
serC JW0890 ECK0898 pdxF pdxC b0907
Product
3-phosphoserine/phosphohydroxythreonine aminotransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 957653 958741 1089 363
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000372
EnteroFam0003093: Trusted threshold=1018.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR003248 (IPR003248 (DEPRECATED) Phosphoserine aminotransferase, subgroup) Apr 2008
Automated Process Approved IPR000192 (IPR000192 Aminotransferase class V domain) Apr 2008
Automated Process Approved IPR015422 (IPR015422 Pyridoxal phosphate-dependent transferase, small domain) Apr 2008
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Apr 2008
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Apr 2008
Automated Process Approved IPR022278 (IPR022278 Phosphoserine aminotransferase) Jul 2018
Automated Process Approved PF00266 (PF00266 Aminotransferase class-V) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000192
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0006564 L-serine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003248
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Approved GO biological process GO:0006564 L-serine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0004648 O-phospho-L-serine:2-oxoglutarate aminotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR022278
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015422
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015422
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000192
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name serC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Person Approved synonym pdxF Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW0890 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0898 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym pdxC Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b0907 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 3-phosphoserine/phosphohydroxythreonine aminotransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name 3-phosphoserine/phosphohydroxythreonine aminotransferase Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name 3-phosphoserine aminotransferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0003093: Trusted threshold=1018.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000372
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family PF00266 Aminotransferase class-V Protein Sequence Similarity - PFAM Model Name: PF00266
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR015422 Pyridoxal phosphate-dependent transferase, small domain Protein Sequence Similarity - InterPro Domain: IPR015422
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR022278 Phosphoserine aminotransferase Protein Sequence Similarity - InterPro Domain: IPR022278
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR003248 (DEPRECATED) Phosphoserine aminotransferase, subgroup Protein Sequence Similarity - InterPro Domain: IPR003248
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR000192 Aminotransferase class V domain Protein Sequence Similarity - InterPro Domain: IPR000192
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Approved EC number 2.6.1.52 Published Annotation - Swiss-Prot Accession Number: P23721 Feb 2006
Person Uncurated MultiFun 1.5.1.11 (metabolism; building block biosynthesis; amino acids; serine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG10946 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:945527 Published Annotation - Entrez Gene Database ID: 945527
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P23721 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P23721 Published Annotation - Swiss-Prot Accession Number: P23721 Jan 2005
Automated Process Approved db xref ASAP:ABE-0003093 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1787136 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Serine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note 3-phosphoserine aminotransferase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006564 - L-serine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC73993.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Person Approved GO biological process GO:0006564 L-serine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000192
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0006564 L-serine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003248
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000192
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO molecular function GO:0004648 O-phospho-L-serine:2-oxoglutarate aminotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR022278
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015422
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015422
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000372 serC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001528 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000241 serC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000196 serC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000511 serC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000632 serC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000742 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000344 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129582 serC CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105015 serC CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104422 serC CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001467 serC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002748 serC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001735 serC CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002240 serC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007179 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0046565 serC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001793 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002000 serC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300310 serC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001498 serC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002214 serC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004634 serC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007979 serC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000926 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005575 serC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000855 serC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003455 serC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008561 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007969 serC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007218 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077137 serC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000910 serC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001146 serC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009401 serC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008442 serC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000947 serC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005449 serC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002211 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009771 serC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008820 serC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010323 serC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005908 serC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008833 serC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009660 serC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008927 serC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009316 serC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008544 serC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009100 serC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007641 serC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025071 serC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007167 serC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005692 serC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001266 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000873 serC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000916 serC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001203 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001166 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001194 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000996 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175133 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000991 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002213 serC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130904 serC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005672 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000981 serC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001030 serC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002275 serC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000937 serC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003884 serC CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007027 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000660 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001244 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000691 serC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003515 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001403 serC CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002859 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009087 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003073 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288159 serC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004500 serC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062858 serC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001592 serC CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000682 serC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001993 serC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006556 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140457 serC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001776 serC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005160 serC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002087 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001105 serC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005314 serC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002991 serC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002893 serC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007947 serC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005439 serC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004797 serC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007393 serC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005379 serC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004588 serC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005379 serC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007914 serC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001833 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001821 serC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002552 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005667 serC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005679 serC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005179 serC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006201 serC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107205 serC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083671 serC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001107 serC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093486 serC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008487 serC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009053 serC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008762 serC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004100 serC CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265997 serC CDS
Person Approved Go view Shigella boydii 227 ADV-0002432 serC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007832 serC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007160 serC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002710 serC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071994 serC CDS
Person Approved Go view Shigella flexneri 301 ABT-0087255 serC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000960 serC CDS
Person Approved Go view Shigella sonnei 046 ADD-0000976 serC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001227 VC1159 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000006 serC CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002788 serC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001426 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004668 serC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001326 serC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000973 serC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000629 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237057 serC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006065 serC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000838 serC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005509 serC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002009 serC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119941 serC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006266 serC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004528 serC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002110 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008310 serC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005071 serC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032523 serC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005222 serC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003105 serC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002762 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005881 serC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006568 serC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001486 serC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001803 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003162 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011237 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004469 serC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 952653 to 963741
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003071pflBCDScomplement951272953554Upstream
ABE-0003073focACDScomplement953609954466Upstream
ABE-0003081ycaOCDScomplement954872956632Upstream
ABE-0003089ycaPCDSforward956762957454Upstream
ABE-0003093serCCDSforward957653958741Matches
ABE-0003095aroACDSforward958812960095Downstream
ABE-0003098ycaLCDSforward960264961028Downstream
ABE-0003101cmkCDSforward961201961884Downstream
ABE-0003104rpsACDSforward961995963668Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.