Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003095 (aroA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003095 showshow history
Names
aroA JW0891 ECK0899 b0908
Product
3-phosphoshikimate 1-carboxyvinyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 958812 960095 1284 428
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000373
EnteroFam0003095: Trusted threshold=1178.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR013792 (IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta) Apr 2008
Automated Process Approved IPR001986 (IPR001986 Enolpyruvate transferase domain) Apr 2008
Automated Process Approved IPR006264 (IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase) Apr 2008
Automated Process Approved PF00275 (PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)) Jul 2018
Automated Process Uncurated CBM48 (CBM48 Carbohydrate-Binding Module Family 48) Jul 2018
Automated Process Uncurated GH13 (GH13 Glycoside Hydrolase Family 13) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009423 chorismate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0009073 aromatic amino acid family biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006264
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013792
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003866 3-phosphoshikimate 1-carboxyvinyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001986
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name aroA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0899 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0891 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0908 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 3-phosphoshikimate 1-carboxyvinyltransferase Experimental - PubMed ID: 6229418
Reference: Escherichia coli K-12 		Feb 2007
Automated Process Approved alternate product name 5-enolpyruvylshikimate-3-phosphate synthetase Experimental - PubMed ID: 4942558
Reference: Salmonella Typhimurium LT2 		Sep 2007
Protein Family
Person Approved EnteroFam EnteroFam0003095: Trusted threshold=1178.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000373
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta Protein Sequence Similarity - InterPro Domain: IPR013792
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase Protein Sequence Similarity - InterPro Domain: IPR006264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001986 Enolpyruvate transferase domain Protein Sequence Similarity - InterPro Domain: IPR001986
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated protein family CBM48 Carbohydrate-Binding Module Family 48 Protein Sequence Similarity - CAZy Model Name: CBM48
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Protein Sequence Similarity - PFAM Model Name: PF00275
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated protein family GH13 Glycoside Hydrolase Family 13 Protein Sequence Similarity - CAZy Model Name: GH13
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 2.5.-.- Published Annotation - Database Name: EC2GO: GO:0016765
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.5.1.19 Published Annotation - Swiss-Prot Accession Number: P0A6D3 Feb 2006
Automated Process Uncurated EC number 2.5.1.- Published Annotation - Database Name: EC2GO: GO:0016765
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.5.1.20 (metabolism; building block biosynthesis; amino acids; chorismate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10073 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A6D3 Published Annotation - Swiss-Prot Accession Number: P0A6D3 Jan 2006
Automated Process Approved db xref GI:1787137 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945528 Published Annotation - Entrez Gene Database ID: 945528
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A6D3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003095 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Chorismate Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0009423 - chorismate biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73994.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0009073 aromatic amino acid family biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006264
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009423 chorismate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013792
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003866 3-phosphoshikimate 1-carboxyvinyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001986
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000373 aroA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001529 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000368 aroA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000294 aroA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000510 aroA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000633 aroA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000741 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000345 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129581 aroA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105014 aroA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104421 aroA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001468 aroA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002747 aroA CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001736 aroA CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002241 aroA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007178 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020658 aroA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001794 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002001 aroA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300313 aroA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001499 aroA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002213 aroA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004633 aroA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007980 aroA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000927 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005574 aroA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000856 aroA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003454 aroA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008560 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007968 aroA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007217 aroA pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077138 aroA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000911 aroA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001147 aroA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009400 aroA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008441 aroA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000948 aroA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005450 aroA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004102 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009772 aroA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008821 aroA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010324 aroA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005909 aroA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008832 aroA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009661 aroA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008928 aroA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009317 aroA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008543 aroA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009099 aroA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007642 aroA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025072 aroA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007168 aroA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005693 aroA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001265 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000874 aroA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000917 aroA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001204 aroA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001167 aroA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001193 aroA CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000997 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175134 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000992 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002212 aroA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130905 aroA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005673 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000982 aroA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001031 aroA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002276 aroA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000938 aroA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003885 aroA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007026 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000661 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001245 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000692 aroA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003514 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001404 aroA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002858 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009088 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003074 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288160 aroA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004501 aroA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062857 aroA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001593 aroA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002939 aroA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001992 aroA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006557 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140460 aroA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001068 aroA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005162 aroA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002086 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001106 aroA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005316 aroA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002994 aroA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002896 aroA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007946 aroA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005440 aroA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004798 aroA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007394 aroA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005380 aroA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004589 aroA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005380 aroA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007915 aroA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001832 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001820 aroA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002551 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005668 aroA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005678 aroA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005180 aroA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107208 aroA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083670 aroA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001108 aroA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093487 aroA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008486 aroA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009052 aroA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008763 aroA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004099 aroA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265991 aroA CDS
Person Approved Go view Shigella boydii 227 ADV-0002433 aroA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007831 aroA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007161 aroA CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0002709 aroA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071995 aroA CDS
Person Approved Go view Shigella flexneri 301 ABT-0087256 aroA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000961 aroA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000977 aroA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001805 VC1732 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000005 aroA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002791 aroA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001425 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004671 aroA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001328 aroA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000972 aroA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000630 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237056 aroA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006066 aroA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000839 aroA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005510 aroA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002010 aroA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119944 aroA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006267 aroA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004527 aroA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002109 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008309 aroA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005070 aroA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032522 aroA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005221 aroA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003104 aroA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002761 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005880 aroA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006567 aroA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001487 aroA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001804 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003161 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011243 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004468 aroA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20249mutantTn5 InsertionRequest the StrainABE-0003095aroAaroA::Tn5KAN-2 at position 265 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 953812 to 965095
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003073focACDScomplement953609954466Upstream
ABE-0003081ycaOCDScomplement954872956632Upstream
ABE-0003089ycaPCDSforward956762957454Upstream
ABE-0003093serCCDSforward957653958741Upstream
ABE-0003095aroACDSforward958812960095Matches
ABE-0003098ycaLCDSforward960264961028Downstream
ABE-0003101cmkCDSforward961201961884Downstream
ABE-0003104rpsACDSforward961995963668Downstream
ABE-0003107ihfBCDSforward963828964112Downstream
ABE-0003111ycaICDSforward964320966584Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.