Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003113 (msbA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003113 showshow history
Names
msbA JW0897 ECK0905 b0914
Product
membrane component of an ABC superfamily lipid transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 966621 968369 1749 583
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000378
EnteroFam0003113: Trusted threshold=1643.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR001140 (IPR001140 (DEPRECATED) ABC transporter, transmembrane domain) Apr 2008
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR011527 (IPR011527 ABC transporter type 1, transmembrane domain) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR011917 (IPR011917 ABC transporter, lipid A-core flippase, MsbA) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved IPR036640 (IPR036640 ABC transporter type 1, transmembrane domain superfamily) Jul 2018
Automated Process Approved PF00664 (PF00664 ABC transporter transmembrane region) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001140
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011527
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0006869 lipid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011917
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001140
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011917
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO molecular function GO:0034040 ATPase-coupled lipid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011917
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0042626 ATPase-coupled transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001140
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001140
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name msbA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Person Approved synonym ECK0905 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0897 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0914 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product membrane component of an ABC superfamily lipid transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Oct 2021
Automated Process Approved alternate product name fused lipid transporter subunits of ABC superfamily: membrane component/ATP-binding component Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Uncurated alternate product name multidrug transport protein (ABC superfamily, membrane (N-terminal), atp_bind (C-terminal)) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name ATP-binding transport protein; multicopy suppressor of htrB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0003113: Trusted threshold=1643.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000378
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family IPR001140 (DEPRECATED) ABC transporter, transmembrane domain Protein Sequence Similarity - InterPro Domain: IPR001140
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR036640 ABC transporter type 1, transmembrane domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036640
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF00664 ABC transporter transmembrane region Protein Sequence Similarity - PFAM Model Name: PF00664
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR011917 ABC transporter, lipid A-core flippase, MsbA Protein Sequence Similarity - InterPro Domain: IPR011917
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR011527 ABC transporter type 1, transmembrane domain Protein Sequence Similarity - InterPro Domain: IPR011527
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Uncurated EC number 3.6.3.- Protein Sequence Similarity - InterPro Domain: IPR011917
Reference: Escherichia coli K-12 MG1655
Dec 2008
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.49 (transport; substrate; drug) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.am (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, ATP binding and membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P60752 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1787143 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:945530 Published Annotation - Entrez Gene Database ID: 945530
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref ASAP:ABE-0003113 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG10613 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P60752 Published Annotation - Swiss-Prot Accession Number: P60752 Jan 2006
Person Approved function transport; Transport of small molecules: Other Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note ATP-binding transport protein; multicopy suppressor of htrB; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC74000.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved structure PDB:1JSQ wt, whole, crystallized with OsCl3;4.5 A;x-ray diffraction. Experimental - PubMed ID: 11546864
Reference: Escherichia coli
May 2005
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006869 lipid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011917
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011527
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001140
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001140
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011917
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0042626 ATPase-coupled transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001140
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO molecular function GO:0034040 ATPase-coupled lipid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011917
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001140
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000378 msbA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001545 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000296 msbA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000210 msbA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000802 msbA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000217 msbA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000719 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000369 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001474 msbA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002742 msbA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001742 msbA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002247 msbA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007141 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019397 msbA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001823 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300333 msbA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001505 msbA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002208 msbA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004628 msbA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007986 msbA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000933 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005568 msbA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000862 msbA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003447 msbA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008552 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007962 msbA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007210 MsbA CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077146 msbA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000917 msbA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001153 msbA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009394 msbA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008435 msbA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000954 msbA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005456 msbA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003639 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009778 msbA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008827 msbA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010641 msbA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009279 msbA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005915 msbA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008826 msbA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009670 msbA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008934 msbA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009324 msbA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008537 msbA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009093 msbA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007648 msbA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025078 msbA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007174 msbA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005699 msbA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001259 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000880 msbA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000923 msbA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001210 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001173 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001187 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175141 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000998 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002205 msbA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130911 msbA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005679 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000988 msbA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001036 msbA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002281 msbA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000943 msbA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003892 msbA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006991 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000666 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001251 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000697 msbA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003508 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001410 msbA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002853 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009093 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288167 msbA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062821 msbA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001557 msbA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003931 msbA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001956 msbA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006597 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140483 msbA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005062 msbA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005168 msbA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002077 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001117 msbA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005322 msbA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003020 msbA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002921 msbA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007940 msbA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005446 msbA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007437 msbA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007400 msbA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007712 msbA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004597 msbA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005386 msbA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007921 msbA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001826 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001814 msbA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002543 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005675 msbA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008111 msbA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005187 msbA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006379 msbA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107220 msbA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083664 msbA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001115 msbA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093511 msbA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008480 msbA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008264 msbA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008975 msbA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004094 msbA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266407 msbA CDS
Person Approved Go view Shigella boydii 227 ADV-0002442 msbA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007822 msbA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003701 msbA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002698 msbA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072003 msbA CDS
Person Approved Go view Shigella flexneri 301 ABT-0255943 msbA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000969 msbA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000985 msbA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001952 VC1878 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000415 msbA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002802 msbA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001420 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004692 msbA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001333 msbA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000967 msbA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000635 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237033 msbA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006072 msbA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000844 msbA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005515 msbA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002015 msbA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119973 msbA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006272 msbA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004522 msbA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002102 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008304 msbA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005065 msbA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032516 msbA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005216 msbA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003098 msbA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002755 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005875 msbA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006562 msbA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001492 msbA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001810 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003155 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011273 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004463 msbA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 961621 to 973369
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003101cmkCDSforward961201961884Upstream
ABE-0003104rpsACDSforward961995963668Upstream
ABE-0003107ihfBCDSforward963828964112Upstream
ABE-0003111ycaICDSforward964320966584Upstream
ABE-0003113msbACDSforward966621968369Matches
ABE-0003115lpxKCDSforward968366969352Overlaps Downstream
ABE-0003117ycaQCDSforward969389970621Downstream
ABE-0003120ycaRCDSforward970673970855Downstream
ABE-0003122kdsBCDSforward970852971598Downstream
ABE-0003125ycbJCDSforward971752972645Downstream
ABE-0003127elyCCDScomplement972622973401Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.