Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003115 (lpxK) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003115 showshow history
Names
lpxK JW0898 ECK0906 ycaH b0915
Product
lipid A 4'kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 968366 969352 987 329
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000379
EnteroFam0003115: Trusted threshold=797.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003758 (IPR003758 Tetraacyldisaccharide 4'-kinase) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF02606 (PF02606 Tetraacyldisaccharide-1-P 4'-kinase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009405 (OBSOLETE) pathogenesis GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Person Uncurated GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0051701 biological process involved in interaction with host GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Automated Process Approved GO biological process GO:0009245 lipid A biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003758
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009245 lipid A biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009248 K antigen biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0030113 (DEPRECATED) capsule (sensu Bacteria) Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003758
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0009029 tetraacyldisaccharide 4'-kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003758
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lpxK Published Annotation - PubMed ID: 9268317
Reference: Escherichia coli K-12 W3110 		Jan 2007
Person Approved synonym JW0898 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0906 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ycaH Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b0915 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product lipid A 4'kinase Experimental - PubMed ID: 9575203
Reference: Escherichia coli K-12 		Jan 2007
Person Approved alternate product name tetraacyldisaccharide 4' kinase (lipid A 4'kinase) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0003115: Trusted threshold=797.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000379
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF02606 Tetraacyldisaccharide-1-P 4'-kinase Protein Sequence Similarity - PFAM Model Name: PF02606
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003758 Tetraacyldisaccharide 4'-kinase Protein Sequence Similarity - InterPro Domain: IPR003758
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.1.130 Published Annotation - Swiss-Prot Accession Number: P27300 Feb 2006
Person Uncurated MultiFun 1.6.5 (metabolism; macromolecules (cellular constituent) biosynthesis; K antigen) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.3.3 (metabolism; macromolecules (cellular constituent) biosynthesis; lipopolysaccharide; lipid A) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.7 (cell structure; capsule (M and K antigens)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.3.2 (metabolism; macromolecules (cellular constituent) biosynthesis; lipopolysaccharide; core region) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945526 Published Annotation - Entrez Gene Database ID: 945526
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P27300 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787144 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P27300 Published Annotation - Swiss-Prot Accession Number: P27300 Jan 2005
Automated Process Approved db xref ASAP:ABE-0003115 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11409 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated function transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) Published Annotation - PubMed ID: 9268317
Reference: Escherichia coli K-12 W3110 		Jan 2007
Person Uncurated function sixth of nine steps in the biosynthesis of Kdo2-lipid A Published Annotation - PubMed ID: 9268317
Reference: Escherichia coli K-12 W3110 		Jan 2007
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009244 - lipopolysaccharide core region biosynthetic process; GO_process: GO:0009245 - lipid A biosynthetic process; GO_process: GO:0009248 - K antigen biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74001.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem known or putative virulence factor Published Annotation - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009245 lipid A biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003758
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009405 (OBSOLETE) pathogenesis GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Person Uncurated GO biological process GO:0009248 K antigen biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0051701 biological process involved in interaction with host GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Person Uncurated GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO biological process GO:0009245 lipid A biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0030113 (DEPRECATED) capsule (sensu Bacteria) Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0009029 tetraacyldisaccharide 4'-kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003758
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003758
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000379 lpxK CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001546 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000564 lpxK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000457 lpxK CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000803 lpxK CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000780 lpxK CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000370 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001475 lpxK CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002741 lpxK CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001743 lpxK CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002248 lpxK CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007140 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019396 lpxK CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001824 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002007 lpxK CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300340 lpxK CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001506 lpxK CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002207 lpxK CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004627 lpxK CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007987 lpxK CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000934 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005567 lpxK CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000863 lpxK CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003446 lpxK CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008551 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007961 lpxK CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007209 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081818 lpxK CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000918 lpxK CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001154 lpxK CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009393 lpxK CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008434 lpxK CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000955 lpxK CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005457 lpxK CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003640 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009779 lpxK CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008828 lpxK CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010642 lpxK CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009280 lpxK CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005916 lpxK CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008825 lpxK CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009671 lpxK CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008935 lpxK CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009325 lpxK CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008536 lpxK CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009092 lpxK CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007649 lpxK CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025079 lpxK CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007175 lpxK CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005700 lpxK CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001258 lpxK CDS
Automated Process Uncurated Go view Escherichia coli K-12 DH10B AEC-0004433 lpxK CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000924 lpxK CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001211 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001174 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001186 CDS
Person Uncurated Go view Escherichia coli Nissle 1917 AML-0001005 lpxK pseudogene
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175142 lpxK CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000999 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002204 lpxK CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130912 lpxK CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005680 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000989 lpxK CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001037 lpxK CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002282 lpxK CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000944 lpxK CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003893 lpxK CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006990 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000667 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001252 lpxK CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000698 lpxK CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003507 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001411 lpxK CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002852 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009094 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003080 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288168 lpxK CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004507 lpxK CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062820 lpxK CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003666 lpxK CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003930 lpxK CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001955 lpxK CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006598 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140485 lpxK CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003909 lpxK CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005169 lpxK CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002076 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001118 lpxK CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005323 lpxK CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003027 lpxK CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002928 lpxK CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007939 lpxK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005447 lpxK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007438 lpxK CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007401 lpxK CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007713 lpxK CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004598 lpxK CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005387 lpxK CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007922 lpxK CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001825 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001813 lpxK CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002542 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005676 lpxK CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008110 lpxK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005188 lpxK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006380 lpxK CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107223 lpxK CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083663 lpxK CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001116 lpxK CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093514 lpxK CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008479 lpxK CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008263 lpxK CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008976 lpxK CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004093 lpxK CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266406 lpxK CDS
Person Approved Go view Shigella boydii 227 ADV-0002443 ycaH CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007821 lpxK CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003700 lpxK CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002697 ycaH CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072004 lpxK CDS
Person Approved Go view Shigella flexneri 301 ABT-0087263 ycaH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000970 ycaH CDS
Person Approved Go view Shigella sonnei 046 ADD-0000986 lpxK CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001951 VC1877 CDS
Person Uncurated Go view Wigglesworthia brevipalpis ACB-0135752 ycaH CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000712 lpxK pseudogene
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002803 lpxK CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001419 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004699 lpxK CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001334 lpxK CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000966 lpxK CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000636 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237029 lpxK CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006073 lpxK CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000846 lpxK CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005516 lpxK CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002016 lpxK CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119984 lpxK CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006273 lpxK CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004521 lpxK CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002101 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008303 lpxK CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005064 lpxK CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032515 lpxK CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005215 lpxK CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003097 lpxK CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002754 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005874 lpxK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006561 lpxK CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001493 lpxK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001812 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003154 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011284 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004462 lpxK CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 963366 to 974352
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003104rpsACDSforward961995963668Upstream
ABE-0003107ihfBCDSforward963828964112Upstream
ABE-0003111ycaICDSforward964320966584Upstream
ABE-0003113msbACDSforward966621968369Overlaps Upstream
ABE-0003115lpxKCDSforward968366969352Matches
ABE-0003117ycaQCDSforward969389970621Downstream
ABE-0003120ycaRCDSforward970673970855Downstream
ABE-0003122kdsBCDSforward970852971598Downstream
ABE-0003125ycbJCDSforward971752972645Downstream
ABE-0003127elyCCDScomplement972622973401Downstream
ABE-0003131cmoMCDSforward973537974322Downstream
ABE-0003134mukFCDSforward974319975641Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.