Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003150 (aspC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003150 showshow history
Names
aspC JW0911 ECK0919 b0928
Product
aspartate transaminase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 984519 985709 1191 397
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000390
EnteroFam0003150: Trusted threshold=1141.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Apr 2008
Automated Process Approved IPR004839 (IPR004839 Aminotransferase, class I/classII) Apr 2008
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Apr 2008
Automated Process Approved IPR004838 (IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site) Apr 2008
Automated Process Approved IPR000796 (IPR000796 Aspartate/other aminotransferase) Apr 2008
Automated Process Approved PF00155 (PF00155 Aminotransferase class I and II) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000796
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006532 aspartate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000796
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016769 transferase activity, transferring nitrogenous groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name aspC Published Sequence Analysis - PubMed ID: 3897210
Reference: Escherichia coli K-12 		Feb 2007
Person Approved synonym ECK0919 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0911 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0928 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product aspartate transaminase Experimental - PubMed ID: 387032
Reference: Escherichia coli B 		Feb 2007
Person Uncurated alternate product name aspartate aminotransferase, PLP-dependent Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name aspartate aminotransferase Experimental - PubMed ID: 6378205
Reference: Escherichia coli B 		Feb 2007
Protein Family
Person Approved EnteroFam EnteroFam0003150: Trusted threshold=1141.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000390
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR000796 Aspartate/other aminotransferase Protein Sequence Similarity - InterPro Domain: IPR000796
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00155 Aminotransferase class I and II Protein Sequence Similarity - PFAM Model Name: PF00155
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site Protein Sequence Similarity - InterPro Domain: IPR004838
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004839 Aminotransferase, class I/classII Protein Sequence Similarity - InterPro Domain: IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 2.6.1.- Published Annotation - Database Name: EC2GO: GO:0008483
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.6.1.1 Experimental - PubMed ID: 1993208
Reference: Escherichia coli 		Feb 2007
Person Uncurated MultiFun 1.1.3 (metabolism; carbon utilization; amino acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.5 (metabolism; building block biosynthesis; amino acids; aspartate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945553 Published Annotation - Entrez Gene Database ID: 945553
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P00509 Published Annotation - Swiss-Prot Accession Number: P00509 Jan 2005
Automated Process Approved db xref GI:1787159 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10096 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P00509 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003150 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Aspartate Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note aspartate aminotransferase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009063 - cellular amino acid catabolic process; GO_process: GO:0006532 - aspartate biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74014.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000796
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006532 aspartate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000796
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016769 transferase activity, transferring nitrogenous groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000390 aspC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001556 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000679 aspC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000727 aspC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000935 aspC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000934 aspC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000706 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000384 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001488 aspC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002728 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001756 aspC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002261 aspC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006375 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020073 aspC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002463 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002020 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300375 aspC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001519 aspC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002195 aspC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004612 aspC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008000 aspC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000947 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005554 aspC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000876 aspC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003433 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008535 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007946 aspC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007196 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077162 aspC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000931 aspC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001251 aspC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008418 aspC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000968 aspC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005471 aspC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004457 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009792 aspC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008841 aspC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010498 aspC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009293 aspC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005929 aspC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008812 aspC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008948 aspC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009338 aspC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008523 aspC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010628 aspC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007662 aspC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025092 aspC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007188 aspC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005714 aspC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001245 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000893 aspC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000937 aspC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001225 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001188 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001172 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001020 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175159 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001012 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002191 aspC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130925 aspC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005694 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001003 aspC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001052 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002305 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000957 aspC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003906 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006304 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000680 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001265 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000710 aspC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003495 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001423 aspC CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002840 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009107 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003093 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288180 aspC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004520 aspC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062807 aspC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001486 aspC CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003925 aspC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003919 aspC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006614 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140771 aspC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005182 aspC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002060 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001132 aspC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005336 aspC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003062 aspC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002963 aspC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008970 aspC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005460 aspC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007451 aspC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007415 aspC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007726 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004611 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005400 aspC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007935 aspC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001812 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001800 aspC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002528 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005689 aspC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008097 aspC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005202 aspC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006394 aspC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107239 aspC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083650 aspC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001130 aspC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093552 aspC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008466 aspC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008250 aspC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008989 aspC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004076 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265936 aspC-1 CDS
Person Approved Go view Shigella boydii 227 ADV-0002462 aspC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007802 aspC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007167 aspC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002682 aspC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072021 aspC CDS
Person Approved Go view Shigella flexneri 301 ABT-0087277 aspC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000985 aspC CDS
Person Approved Go view Shigella sonnei 046 ADD-0001001 aspC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001365 VC1293 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000278 aspC CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002833 aspC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003245 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004739 aspC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001351 aspC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000950 aspC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000651 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237007 aspC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006090 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000865 aspC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005532 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002030 aspC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120011 aspC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004505 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002665 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008285 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005048 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032498 aspC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005198 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003081 aspC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002738 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005854 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006545 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001506 aspC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001827 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003138 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011338 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004444 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20252mutantTn5 InsertionRequest the StrainABE-0003150aspCaspC::Tn5KAN-2 at position 615 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 979519 to 990709
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003138mukBCDSforward976326980786Downstream
ABE-0003142ldtDCDSforward981047982894Downstream
ABE-0003145mepKCDSforward983075983623Downstream
ABE-0003147gloCCDSforward983650984297Downstream
ABE-0285413repeat_regionforward984361984458Downstream
ABE-0003150aspCCDScomplement984519985709Matches
ABE-0003153ompFCDScomplement985894986982Upstream
ABE-0003162asnSCDScomplement987585988985Upstream
ABE-0003167pncBCDScomplement989154990356Upstream
ABE-0003171pepNCDSforward990622993234Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.