Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003162 (asnS) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003162 showshow history
Names
asnS JW0913 ECK0921 tss lcs b0930
Product
asparaginyl tRNA synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 987585 988985 1401 467
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000391
EnteroFam0003162: Trusted threshold=1383; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004365 (IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type) Apr 2008
Automated Process Approved IPR004364 (IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N)) Apr 2008
Automated Process Approved IPR012340 (IPR012340 Nucleic acid-binding, OB-fold) Apr 2008
Automated Process Approved IPR006195 (IPR006195 Aminoacyl-tRNA synthetase, class II) Apr 2008
Automated Process Approved IPR002312 (IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb) Apr 2008
Automated Process Approved IPR004522 (IPR004522 Asparagine-tRNA ligase) Apr 2008
Automated Process Approved PF01336 (PF01336 OB-fold nucleic acid binding domain) Jul 2018
Automated Process Approved PF00152 (PF00152 tRNA synthetases class II (D, K and N)) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006421 asparaginyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004522
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006422 aspartyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002312
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004364
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004364
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004816 asparagine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004522
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004364, IPR004522
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004815 aspartate-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002312
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004364
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003676 nucleic acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004365
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004364
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name asnS Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym lcs Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym tss Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW0913 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0921 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0930 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product asparaginyl tRNA synthetase Published Annotation - PubMed ID: 334719
Reference: Escherichia coli K-12 		Feb 2007
Person Approved alternate product name asparagine tRNA synthetase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0003162: Trusted threshold=1383; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000391
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) Protein Sequence Similarity - InterPro Domain: IPR004364
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004522 Asparagine-tRNA ligase Protein Sequence Similarity - InterPro Domain: IPR004522
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006195 Aminoacyl-tRNA synthetase, class II Protein Sequence Similarity - InterPro Domain: IPR006195
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00152 tRNA synthetases class II (D, K and N) Protein Sequence Similarity - PFAM Model Name: PF00152
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01336 OB-fold nucleic acid binding domain Protein Sequence Similarity - PFAM Model Name: PF01336
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb Protein Sequence Similarity - InterPro Domain: IPR002312
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012340 Nucleic acid-binding, OB-fold Protein Sequence Similarity - InterPro Domain: IPR012340
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type Protein Sequence Similarity - InterPro Domain: IPR004365
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 6.1.1.22 Published Annotation - Swiss-Prot Accession Number: P0A8M0 Feb 2006
Automated Process Uncurated EC number 6.1.1.- Published Annotation - Database Name: EC2GO: GO:0004812
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 2.3.1 (information transfer; protein related; amino acid -activation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10094 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787161 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003162 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945555 Published Annotation - Entrez Gene Database ID: 945555
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0A8M0 Published Annotation - Swiss-Prot Accession Number: P0A8M0 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A8M0 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Aminoacyl tRNA synthetases, tRNA modification Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note asparagine tRNA synthetase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006418 - tRNA aminoacylation for protein translation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74016.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006421 asparaginyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004522
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004364
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006422 aspartyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002312
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004364
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003676 nucleic acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004365
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004816 asparagine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004522
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004815 aspartate-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002312
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004364
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004364
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004364, IPR004522
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000391 asnS CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001557 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000319 asnS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000302 asnS CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000530 asnS CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001141 asnS CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000704 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000387 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129630 asnS CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105055 asnS CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104471 asnS CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001490 asnS CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002726 asnS CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001758 asnC_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002263 asnC_2 CDS
Person Uncurated Go view Citrobacter freundii ATCC 8090 [T] (AToL DRAFT) API-0005097 asnS pseudogene
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006380 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020082 asnS CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002458 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002023 asnS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300381 asnS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001521 asnS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002193 asnS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004610 asnS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008003 asnS CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000949 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005552 asnS CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000878 asnS CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003431 asnS CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008532 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007943 asnS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007194 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077164 asnS CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000933 asnS CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001254 asnS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010511 asnS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008415 asnS CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000970 asnS CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005474 asnS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004454 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009794 asnS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008843 asnS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010496 asnS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009295 asnS CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005931 asnS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008810 asnS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009689 asnS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008950 asnS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009340 asnS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008521 asnS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007664 asnS CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025094 asnS CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007190 asnS CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005716 asnS CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001242 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000895 asnS CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000939 asnS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001227 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001190 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001169 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001022 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001015 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002189 asnS CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130927 asnS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005697 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001005 asnS CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001054 asnS CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002307 asnS CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000963 asnS CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003908 asnS CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006309 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000682 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001267 asnC CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000712 asnS CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003493 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001425 asnS CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002838 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009109 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003095 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288182 asnS CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004522 asnS CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062805 asnS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001488 asnS CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001851 asnS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003917 asnS CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006617 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140781 asnS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005186 asnS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002054 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001134 asnS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005340 asnS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003069 asnS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002970 asnS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008974 asnS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005464 asnS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007456 asnS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007418 asnS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007729 asnS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004614 asnS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005404 asnS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007939 asnS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001810 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001798 asnS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002524 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005693 asnS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008093 asnS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005206 asnS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006398 asnS CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107243 asnS CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083648 asnS CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001134 asnS CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093568 asnS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008463 asnS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008247 asnS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007526 asnS CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004074 asnS CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265799 asnS CDS
Person Approved Go view Shigella boydii 227 ADV-0002464 asnS CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007800 asnS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007170 asnS CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002680 asnS CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072023 asnS CDS
Person Approved Go view Shigella flexneri 301 ABT-0087279 asnS CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000987 asnS CDS
Person Approved Go view Shigella sonnei 046 ADD-0001003 asnS CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001369 VC1297 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000425 asnS CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002839 asnS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003243 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004755 asnS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001353 asnC_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000948 asnS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000653 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237004 asnS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006093 asnS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000869 asnS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005534 asnS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002032 asnS CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120017 asnS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004503 asnS CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008283 asnS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005046 asnS CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032496 asnS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005196 asnS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003078 asnS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002735 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005851 asnS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006543 asnS CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001508 asnS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001830 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003135 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011349 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004441 asnS CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 982585 to 993985
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003142ldtDCDSforward981047982894Downstream
ABE-0003145mepKCDSforward983075983623Downstream
ABE-0003147gloCCDSforward983650984297Downstream
ABE-0285413repeat_regionforward984361984458Downstream
ABE-0003150aspCCDScomplement984519985709Downstream
ABE-0003153ompFCDScomplement985894986982Downstream
ABE-0003162asnSCDScomplement987585988985Matches
ABE-0003167pncBCDScomplement989154990356Upstream
ABE-0003171pepNCDSforward990622993234Upstream
ABE-0003173ssuBCDScomplement993277994044Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.