Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003171 (pepN) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003171 showshow history
Names
pepN JW0915 ECK0923 b0932
Product
aminopeptidase N
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 990622 993234 2613 871
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000393
EnteroFam0003171: Trusted threshold=2403; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR012779 (IPR012779 Peptidase M1, alanyl aminopeptidase) Apr 2008
Automated Process Approved IPR006025 (IPR006025 (DEPRECATED) Peptidase M, neutral zinc metallopeptidases, zinc-binding site) Apr 2008
Automated Process Approved IPR014782 (IPR014782 Peptidase M1, membrane alanine aminopeptidase) Apr 2008
Automated Process Approved IPR001930 (IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase) Apr 2008
Automated Process Approved IPR035414 (IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold) Jul 2018
Automated Process Approved IPR024601 (IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal) Jul 2018
Automated Process Approved PF11940 (PF11940 Domain of unknown function (DUF3458) Ig-like fold) Jul 2018
Automated Process Approved PF17432 (PF17432 Domain of unknown function (DUF3458_C) ARM repeats) Jul 2018
Automated Process Approved PF01433 (PF01433 Peptidase family M1 domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006025
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008237 metallopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006025
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004179 (OBSOLETE) membrane alanyl aminopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012779
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012779
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pepN Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0915 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0923 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0932 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product aminopeptidase N Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name aminopeptidase N, a cysteinylglycinase Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name aminopeptidase N Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0003171: Trusted threshold=2403; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000393
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR006025 (DEPRECATED) Peptidase M, neutral zinc metallopeptidases, zinc-binding site Protein Sequence Similarity - InterPro Domain: IPR006025
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012779 Peptidase M1, alanyl aminopeptidase Protein Sequence Similarity - InterPro Domain: IPR012779
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold Protein Sequence Similarity - InterPro Domain: IPR035414
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR014782 Peptidase M1, membrane alanine aminopeptidase Protein Sequence Similarity - InterPro Domain: IPR014782
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01433 Peptidase family M1 domain Protein Sequence Similarity - PFAM Model Name: PF01433
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase Protein Sequence Similarity - InterPro Domain: IPR001930
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF17432 Domain of unknown function (DUF3458_C) ARM repeats Protein Sequence Similarity - PFAM Model Name: PF17432
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF11940 Domain of unknown function (DUF3458) Ig-like fold Protein Sequence Similarity - PFAM Model Name: PF11940
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR024601
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.4.11.2 Published Annotation - Swiss-Prot Accession Number: P04825 Feb 2006
Person Uncurated MultiFun 1.2.3 (metabolism; macromolecule degradation; proteins/peptides/glycopeptides) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787163 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P04825 Published Annotation - Swiss-Prot Accession Number: P04825 Jan 2005
Automated Process Approved db xref GeneID:947253 Published Annotation - Entrez Gene Database ID: 947253
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P04825 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003171 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10696 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of proteins, peptides, glyco Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved protein id AAC74018.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006025
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004179 (OBSOLETE) membrane alanyl aminopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012779
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012779
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008237 metallopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006025
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000393 pepN CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001559 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000926 pepN CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000746 pepN CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001044 pepN CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000718 pepN CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000702 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000389 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001492 pepN CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002722 pepN CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001760 pepN CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002265 pepN CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006382 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0046585 pepN CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002456 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002038 pepN CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300388 pepN CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001524 pepN CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002191 pepN CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004608 pepN CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008005 pepN CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000952 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005549 pepN CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000880 pepN CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003429 pepN CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008530 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007940 pepN CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007191 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077167 pepN CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000935 pepN CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001257 pepN CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010508 pepN CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008412 pepN CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000972 pepN CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005477 pepN CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004452 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009797 pepN CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008846 pepN CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010493 pepN CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009298 pepN CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005934 pepN CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008807 pepN CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008953 pepN CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009342 pepN CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008518 pepN CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010499 pepN CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007667 pepN CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025096 pepN CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007192 pepN CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005719 pepN CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001240 pepN CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000897 pepN CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000941 pepN CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001229 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001192 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001167 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001025 pepN CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175164 pepN CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001018 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002186 pepN CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130929 pepN CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005699 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001007 pepN CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001057 pepN CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002310 pepN CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000970 pepN CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003910 pepN CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006311 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000684 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001269 pepN CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000714 pepN CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003491 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001427 pepN CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002836 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009111 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003097 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288184 pepN CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004524 pepN CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062803 pepN CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001567 pepN CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002929 pepN CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003915 pepN CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006619 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140787 pepN CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003849 pepN CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005193 pepN CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002048 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001204 pepN CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005405 pepN CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003106 pepN CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002987 pepN CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008827 pepN CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005530 pepN CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007522 pepN CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007475 pepN CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007736 pepN CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004620 pepN CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005467 pepN CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008729 pepN CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001805 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001793 pepN CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002515 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005700 pepN CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0009016 pepN CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005208 pepN CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006400 pepN CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107323 pepN CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083577 pepN CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001201 pepN CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093732 pepN CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008401 pepN CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008183 pepN CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007588 pepN CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004070 pepN CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266197 pepN CDS
Person Approved Go view Shigella boydii 227 ADV-0002466 pepN CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007798 pepN CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007172 pepN CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002678 pepN CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072025 pepN CDS
Person Approved Go view Shigella flexneri 301 ABT-0087281 pepN CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000989 pepN CDS
Person Approved Go view Shigella sonnei 046 ADD-0001005 pepN CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001566 VC1494 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002845 pepN CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003241 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004761 pepN CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001355 pepN CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000946 pepN CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000655 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236999 pepN CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006095 pepN CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000871 pepN CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005536 pepN CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002034 pepN CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120023 pepN CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006549 pepN CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004501 pepN CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001502 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008281 pepN CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005044 pepN CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032494 pepN CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005194 pepN CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003076 pepN CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002733 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005849 pepN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006541 pepN CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001510 pepN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001833 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003132 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011365 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004439 pepN CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20254mutantTn5 InsertionRequest the StrainABE-0003171pepNpepN::Tn5KAN-2 at position 1130 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 985622 to 998234
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003150aspCCDScomplement984519985709Upstream
ABE-0003153ompFCDScomplement985894986982Upstream
ABE-0003162asnSCDScomplement987585988985Upstream
ABE-0003167pncBCDScomplement989154990356Upstream
ABE-0003171pepNCDSforward990622993234Matches
ABE-0003173ssuBCDScomplement993277994044Downstream
ABE-0003175ssuCCDScomplement994041994832Downstream
ABE-0003178ssuDCDScomplement994843995988Downstream
ABE-0003180ssuACDScomplement995985996944Downstream
ABE-0003182ssuECDScomplement996937997512Downstream
ABE-0003185elfACDSforward997868998407Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.