Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003173 (ssuB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003173 showshow history
Names
ssuB JW0916 ECK0924 ycbE b0933
Product
ATP-binding component of an ABC superfamily alkanesulfonate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 993277 994044 768 256
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ssuB Experimental - PubMed ID: 10506196
Reference: Escherichia coli 		Aug 2002
Person Approved synonym ycbE Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW0916 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0924 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0933 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product ATP-binding component of an ABC superfamily alkanesulfonate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2008
Person Uncurated alternate product name probable ATP-binding component of ABC transporter Experimental - PubMed ID: 10506196
Reference: Escherichia coli 		Jan 2006
Person Uncurated alternate product name alkanesulfonate transport protein (ABC superfamily, atp_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name alkanesulfonate transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.8.2 (metabolism; metabolism of other compounds; sulfur metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.5 (transport; substrate; alkanesulfonate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12358 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947220 Published Annotation - Entrez Gene Database ID: 947220
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AAI1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787164 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003173 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AAI1 Published Annotation - Swiss-Prot Accession Number: P0AAI1 Jan 2006
Person Approved function putative transport; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note ATP-binding component of ABC superfamily; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006790 - sulfur metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74019.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.12
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002088 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002501 ssuB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002435 ssuB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001910 ssuB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002725 ssuB CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001211 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001493 ssuB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002721 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001761 ssuB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002266 ssuB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006385 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0019870 ssuB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002455 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002039 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300391 ssuB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001525 ssuB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002190 ssuB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008006 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000953 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005548 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000881 ssuB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003428 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008529 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007938 ssuB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007190 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077168 ssuB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010506 ssuB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008410 ssuB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000973 ssuB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005479 ssuB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004451 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009798 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008847 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010492 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009299 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005935 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008806 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009695 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008954 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009343 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008517 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010500 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007668 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025097 ssuB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007193 ssuB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005720 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000898 ssuB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000942 ssuB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001166 CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001019 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002185 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130930 ssuB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005700 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001008 ycbE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001058 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000971 ssuB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003911 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006312 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000685 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001270 ssuB CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000715 ssuB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003490 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001428 ssuB CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002835 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009112 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003098 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288185 ssuB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004525 ssuB CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064751 ssuB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002604 ssuB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001194 ssuB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000795 ssuB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004453 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005392 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004069 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007173 ssuB CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0002677 ycbE CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0072027 ycbE CDS
Person Approved Go view Shigella flexneri 301 ABT-0087282 ycbE CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000990 ycbE CDS
Person Approved Go view Shigella sonnei 046 ADD-0001006 ycbE CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243727 ssuB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005345 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004344 ssuB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008250 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003836 ssuB CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127463 ssuB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008510 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007872 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000636 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006653 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006735 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029832 ssuB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006346 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004257 ssuB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000272 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008264 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004295 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003714 ssuB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004520 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000491 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011370 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004438 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22036mutantTn5 InsertionRequest the StrainABE-0003173ssuBycbE::Tn5KAN-I-SceI at position 559 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 988277 to 999044
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003162asnSCDScomplement987585988985Downstream
ABE-0003167pncBCDScomplement989154990356Downstream
ABE-0003171pepNCDSforward990622993234Downstream
ABE-0003173ssuBCDScomplement993277994044Matches
ABE-0003175ssuCCDScomplement994041994832Overlaps Upstream
ABE-0003178ssuDCDScomplement994843995988Upstream
ABE-0003180ssuACDScomplement995985996944Upstream
ABE-0003182ssuECDScomplement996937997512Upstream
ABE-0003185elfACDSforward997868998407Upstream
ABE-0003187elfDCDSforward998490999191Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.