Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003175 (ssuC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003175 showshow history
Names
ssuC JW5121 ECK0925 ycbM b0934
Product
membrane component of an ABC superfamily alkanesulfonate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 994041 994832 792 264
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Apr 2008
Automated Process Approved IPR035906 (IPR035906 MetI-like superfamily) Jul 2018
Automated Process Approved PF00528 (PF00528 Binding-protein-dependent transport system inner membrane component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006793 phosphorus metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ssuC Experimental - PubMed ID: 10506196
Reference: Escherichia coli 		Aug 2002
Person Approved synonym ECK0925 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5121 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ycbM Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b0934 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product membrane component of an ABC superfamily alkanesulfonate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2008
Person Uncurated alternate product name probable permease component of ABC transporter Experimental - PubMed ID: 10506196
Reference: Escherichia coli 		Jan 2006
Person Uncurated alternate product name alkanesulfonate transport protein (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name putative alkanesulfonate transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family PF00528 Binding-protein-dependent transport system inner membrane component Protein Sequence Similarity - PFAM Model Name: PF00528
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR035906 MetI-like superfamily Protein Sequence Similarity - InterPro Domain: IPR035906
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.5 (transport; substrate; alkanesulfonate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.8.1 (metabolism; metabolism of other compounds; phosphorous metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13705 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947216 Published Annotation - Entrez Gene Database ID: 947216
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:87081802 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P75851 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003175 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P75851 Published Annotation - Swiss-Prot Accession Number: P75851 Jan 2005
Person Approved function putative transport; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0006793 - phosphorus metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74020.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006793 phosphorus metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002089 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002534 ssuC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002415 ssuC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001909 ssuC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002632 ssuC CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001212 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001494 ssuC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002720 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001762 ssuC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002267 ssuC CDS
Automated Process Approved Go view Dickeya chrysanthemi Ech1591 AFK-0006386 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019871 ssuC CDS
Automated Process Approved Go view Dickeya parazeae Ech586 AGC-0002454 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002040 CDS
Automated Process Approved Go view Erwinia amylovora ATCC 49946 ACW-0300396 ssuC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001526 ssuC CDS
Person Uncurated Go view Erwinia amylovora CFBP 1430 AKH-0001431 ssuC CDS
Person Uncurated Go view Erwinia billingiae 661 [T] AKT-0001581 ssuC CDS
Person Uncurated Go view Erwinia pyrifoliae DSM 12163 [T] AJZ-0002495 ssuC CDS
Person Uncurated Go view Erwinia pyrifoliae Ep1/96 AKA-0002319 ssuC CDS
Automated Process Approved Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002189 ssuC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008007 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000954 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005547 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000882 ssuC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003427 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008528 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007937 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007189 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077169 ssuC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000937 ssuC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001260 ycbM CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010505 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008409 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000974 ssuC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005480 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004450 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009799 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008848 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010491 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009300 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005936 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008805 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009696 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008955 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009344 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008516 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010501 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007669 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025098 ssuC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007194 ssuC_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005721 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001238 ssuC CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000899 ssuC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000943 ssuC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001231 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001194 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001165 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001027 ssuC CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175166 ssuC CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001020 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002184 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130931 ssuC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005701 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001009 ycbM CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001059 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000972 ssuC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003912 CDS
Automated Process Approved Go view Musicola paradisiaca Ech703 AGA-0006313 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000686 CDS
Automated Process Approved Go view Pantoea agglomerans SL1-M5 ALY-0001271 CDS
Automated Process Approved Go view Pantoea ananatis AJ13355 AOV-0000716 ssuC CDS
Automated Process Approved Go view Pantoea ananatis B1-9 APL-0003489 CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002834 CDS
Automated Process Approved Go view Pantoea sp. At-9b AGM-0009113 CDS
Automated Process Approved Go view Pantoea sp. aB AJV-0003099 CDS
Person Uncurated Go view Pantoea stewartii DC283 ACV-0291505 ssuC pseudogene
Automated Process Approved Go view Pantoea vagans C9-1 ALK-0004526 ssuC CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064750 ssuC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002605 ssuC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000794 ssuC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004454 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005393 ssuC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004068 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007174 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002676 ycbM CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0072028 ssuC pseudogene
Person Uncurated Go view Shigella flexneri 301 ABT-0087283 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000991 ycbM CDS
Person Approved Go view Shigella sonnei 046 ADD-0001007 ssuC CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243728 ssuC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004343 ssuC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008249 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003837 ssuC CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127454 ssuC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008509 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007871 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000637 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006652 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006734 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029833 ssuC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006345 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004258 ssuC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000271 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008263 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004294 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003715 ssuC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004521 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000490 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011380 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004437 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22148mutantTn5 InsertionRequest the StrainABE-0003175ssuCycbM::Tn5KAN-I-SceI at position 532 in Minus orientation ,+ pKD460Blattner Laboratory
FB22307mutantTn5 InsertionRequest the StrainABE-0003175ssuCycbM::Tn5KAN-I-SceI at position 532 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 989041 to 999832
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003167pncBCDScomplement989154990356Downstream
ABE-0003171pepNCDSforward990622993234Downstream
ABE-0003173ssuBCDScomplement993277994044Overlaps Downstream
ABE-0003175ssuCCDScomplement994041994832Matches
ABE-0003178ssuDCDScomplement994843995988Upstream
ABE-0003180ssuACDScomplement995985996944Upstream
ABE-0003182ssuECDScomplement996937997512Upstream
ABE-0003185elfACDSforward997868998407Upstream
ABE-0003187elfDCDSforward998490999191Upstream
ABE-0003189elfCCDSforward9992161001816Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.