Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003178 (ssuD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003178 showshow history
Names
ssuD ssi6 JW0918 ECK0926 ycbN b0935
Product
FMNH2-dependent alkanesulfonate monooxygenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 994843 995988 1146 382
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011251 (IPR011251 Luciferase-like domain) Apr 2008
Automated Process Approved IPR019911 (IPR019911 Alkanesulphonate monooxygenase, FMN-dependent) Jul 2018
Automated Process Approved IPR036661 (IPR036661 Luciferase-like domain superfamily) Jul 2018
Automated Process Approved PF00296 (PF00296 Luciferase-like monooxygenase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011251, IPR019911, IPR036661
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0008726 alkanesulfonate monooxygenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR019911
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011251, IPR036661
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ssuD Experimental - PubMed ID: 10506196
Reference: Escherichia coli 		Aug 2002
Person Approved synonym ycbN Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW0918 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0926 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ssi6 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b0935 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product FMNH2-dependent alkanesulfonate monooxygenase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name alkanesulfonate monooxygenase, FMNH(2)-dependent Published Annotation - Database Name: GenProtEC Jan 2006
Person Uncurated alternate product name alkanesulfonate monooxygenase Experimental - PubMed ID: 10506196
Reference: Escherichia coli 		Jan 2006
Protein Family
Automated Process Approved protein family IPR019911 Alkanesulphonate monooxygenase, FMN-dependent Protein Sequence Similarity - InterPro Domain: IPR019911
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011251 Luciferase-like domain Protein Sequence Similarity - InterPro Domain: IPR011251
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00296 Luciferase-like monooxygenase Protein Sequence Similarity - PFAM Model Name: PF00296
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036661 Luciferase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036661
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 1.14.-.- Published Annotation - Database Name: EC2GO: GO:0016705
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.14.14.5 Published Annotation - Swiss-Prot Accession Number: P80645 Feb 2006
Person Uncurated MultiFun 1.8.2 (metabolism; metabolism of other compounds; sulfur metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.3.9 (metabolism; building block biosynthesis; cofactor, small molecule carrier; riboflavin (Vitamin B2), FAD, FMN) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13706 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945557 Published Annotation - Entrez Gene Database ID: 945557
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P80645 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P80645 Published Annotation - Swiss-Prot Accession Number: P80645 Jan 2005
Automated Process Approved db xref ASAP:ABE-0003178 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787166 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_process: GO:0006790 - sulfur metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74021.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011251, IPR019911, IPR036661
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0008726 alkanesulfonate monooxygenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR019911
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011251, IPR036661
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002128 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002238 ssuD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002052 ssuD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002231 ssuD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002386 ssuD CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000768 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001495 ssuD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002719 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001763 ssuD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002268 ssuD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006388 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0019873 ssuD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002453 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300399 ssuD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001527 ssuD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002188 ssuD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008008 ssuD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000955 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005546 ssuD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000883 ssuD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003426 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008527 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007936 ssuD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007188 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077170 ssuD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000938 ssuD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001261 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010504 ssuD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008408 ssuD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000975 ssuD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005481 ssuD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004449 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009800 ssuD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008849 ssuD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010490 ssuD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009301 ssuD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005937 ssuD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008804 ssuD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009697 ssuD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008956 ssuD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009345 ssuD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008515 ssuD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010502 ssuD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007670 ssuD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025099 ssuD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007195 ssuD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005722 ssuD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001237 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000900 ssuD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000944 ssuD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001232 ssuD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001195 ssuD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001164 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001028 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001021 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002183 ssuD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130932 ssuD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005702 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001010 ycbN CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001060 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000973 ssuD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003913 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006315 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000687 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001272 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000717 ssuD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003488 CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002833 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009114 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003100 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288188 ssuD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004527 ssuD CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064749 ssuD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002606 ssuD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000793 ssuD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004455 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003524 ssuD CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004067 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007175 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072032 ycbN CDS
Person Approved Go view Shigella flexneri 301 ABT-0087286 ycbN CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000995 ycbN CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243736 ssuD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004342 ssuD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003838 ssuD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127453 ssuD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008508 ssuD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007870 ssuD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000638 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006651 ssuD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006733 ssuD CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029834 ssuD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006344 ssuD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004259 ssuD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000270 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008262 ssuD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004293 ssuD CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003716 ssuD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004522 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000489 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011387 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004436 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22149mutantTn5 InsertionRequest the StrainABE-0003178ssuDycbN::Tn5KAN-I-SceI at position 568 in Plus orientation ,+ pKD465Blattner Laboratory
FB22308mutantTn5 InsertionRequest the StrainABE-0003178ssuDycbN::Tn5KAN-I-SceI at position 568 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 989843 to 1000988
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003167pncBCDScomplement989154990356Downstream
ABE-0003171pepNCDSforward990622993234Downstream
ABE-0003173ssuBCDScomplement993277994044Downstream
ABE-0003175ssuCCDScomplement994041994832Downstream
ABE-0003178ssuDCDScomplement994843995988Matches
ABE-0003180ssuACDScomplement995985996944Overlaps Upstream
ABE-0003182ssuECDScomplement996937997512Upstream
ABE-0003185elfACDSforward997868998407Upstream
ABE-0003187elfDCDSforward998490999191Upstream
ABE-0003189elfCCDSforward9992161001816Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.