Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003182 (ssuE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003182 showshow history
Names
ssuE ssi4 JW0920 ECK0928 ycbP b0937
Product
NAD(P)H-dependent FMN reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 996937 997512 576 192
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005025 (IPR005025 NADPH-dependent FMN reductase-like) Apr 2008
Automated Process Approved IPR014479 (IPR014479 (DEPRECATED) NAD(P)H-dependent FMN reductase) Apr 2008
Automated Process Approved IPR020048 (IPR020048 NADPH-dependent FMN reductase, SsuE) Jul 2018
Automated Process Approved IPR029039 (IPR029039 Flavoprotein-like superfamily) Jul 2018
Automated Process Approved PF03358 (PF03358 NADPH-dependent FMN reductase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0046306 alkanesulfonate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020048
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020048
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0042594 response to starvation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008752 FMN reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020048
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO molecular function GO:0009055 electron transfer activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005025
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ssuE Experimental - PubMed ID: 10480865
Reference: Escherichia coli 		Aug 2002
Person Approved synonym ycbP Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved synonym ssi4 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW0920 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0928 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0937 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product NAD(P)H-dependent FMN reductase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR005025 NADPH-dependent FMN reductase-like Protein Sequence Similarity - InterPro Domain: IPR005025
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029039 Flavoprotein-like superfamily Protein Sequence Similarity - InterPro Domain: IPR029039
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF03358 NADPH-dependent FMN reductase Protein Sequence Similarity - PFAM Model Name: PF03358
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR020048 NADPH-dependent FMN reductase, SsuE Protein Sequence Similarity - InterPro Domain: IPR020048
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR014479 (DEPRECATED) NAD(P)H-dependent FMN reductase Protein Sequence Similarity - InterPro Domain: IPR014479
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated EC number 1.5.1.38 Published Annotation - Swiss-Prot Accession Number: P80644
Reference: Escherichia coli K-12 		Dec 2011
Person Uncurated MultiFun 1.4.3 (metabolism; energy production/transport; electron carrier) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.5.3 (cell processes; adaptation to stress; starvation response) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.8.2 (metabolism; metabolism of other compounds; sulfur metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13708 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P80644 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P80644 Published Annotation - Swiss-Prot Accession Number: P80644 Jan 2005
Automated Process Approved db xref GeneID:945947 Published Annotation - Entrez Gene Database ID: 945947
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1787168 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003182 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_function: GO:0009055 - electron carrier activity; GO_process: GO:0006790 - sulfur metabolic process; GO_process: GO:0042594 - response to starvation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74023.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0046306 alkanesulfonate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020048
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0042594 response to starvation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020048
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005025
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0008752 FMN reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020048
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO molecular function GO:0009055 electron transfer activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003247 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002559 ssuE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002489 ssuE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001908 ssuE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002767 ssuE CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001497 ssuE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002717 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001765 ssuE CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002270 ssuE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006391 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0019875 ssuE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002451 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002043 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300404 ssuE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001529 ssuE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002186 ycbP CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008010 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000957 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005544 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000885 ssuE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003424 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008524 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007934 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007186 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077172 ssuE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000940 ssuE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001263 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010502 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008406 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000977 ssuE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005496 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004447 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009802 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008851 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010488 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009303 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005939 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008802 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009700 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008958 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009347 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008513 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010454 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007672 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025101 ssuE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007197 ssuE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005724 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001235 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000902 ssuE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000946 ssuE CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001030 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175170 pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0001023 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002181 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130934 ssuE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005704 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001012 ycbP CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001062 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000975 ssuE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003915 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006318 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000689 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001274 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000719 ssuE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003486 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001431 ssuE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002831 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009116 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003102 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288190 ssuE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004529 ssuE CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003509 ssuE CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004065 CDS
Person Approved Go view Shigella boydii 227 ADV-0002471 ycbP CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007793 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007177 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002672 ycbP CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072034 ycbP CDS
Person Approved Go view Shigella flexneri 301 ABT-0087288 ycbP CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000997 ycbP CDS
Person Approved Go view Shigella sonnei 046 ADD-0001010 ssuE CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243739 ssuE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004339 ssuE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008245 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003840 ssuE CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127451 ssuE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008506 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007868 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000640 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006649 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006731 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029836 ssuE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006342 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004262 ssuE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000267 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008260 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004291 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003718 ssuE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004525 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011400 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004434 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 991937 to 1002512
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003171pepNCDSforward990622993234Downstream
ABE-0003173ssuBCDScomplement993277994044Downstream
ABE-0003175ssuCCDScomplement994041994832Downstream
ABE-0003178ssuDCDScomplement994843995988Downstream
ABE-0003180ssuACDScomplement995985996944Overlaps Downstream
ABE-0003182ssuECDScomplement996937997512Matches
ABE-0003185elfACDSforward997868998407Upstream
ABE-0003187elfDCDSforward998490999191Upstream
ABE-0003189elfCCDSforward9992161001816Upstream
ABE-0003191elfGCDSforward10018071002877Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.