Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003201 (pyrD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003201 showshow history
Names
pyrD JW0928 ECK0936 b0945
Product
dihydroorotate dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1004768 1005778 1011 337
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000394
EnteroFam0003201: Trusted threshold=959.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR012135 (IPR012135 Dihydroorotate dehydrogenase, class 1/ 2) Apr 2008
Automated Process Approved IPR001295 (IPR001295 Dihydroorotate dehydrogenase, conserved site) Apr 2008
Automated Process Approved IPR005719 (IPR005719 Dihydroorotate dehydrogenase, class 2) Apr 2008
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved IPR005720 (IPR005720 Dihydroorotate dehydrogenase domain) Jul 2018
Automated Process Approved PF01180 (PF01180 Dihydroorotate dehydrogenase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005720, IPR005719
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006221 pyrimidine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001295
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006222 UMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012135
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005719
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005720
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004158 dihydroorotate oxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005719
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004152 dihydroorotate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012135
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pyrD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0936 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0928 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0945 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product dihydroorotate dehydrogenase Experimental - PubMed ID: 10074342
Reference: Escherichia coli 		Dec 2018
Person Uncurated alternate product name dihydro-orotate oxidase, FMN-linked Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Dec 2018
Person Approved alternate product name dihydro-orotate dehydrogenase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0003201: Trusted threshold=959.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000394
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01180 Dihydroorotate dehydrogenase Protein Sequence Similarity - PFAM Model Name: PF01180
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005719 Dihydroorotate dehydrogenase, class 2 Protein Sequence Similarity - InterPro Domain: IPR005719
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005720 Dihydroorotate dehydrogenase domain Protein Sequence Similarity - InterPro Domain: IPR005720
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001295 Dihydroorotate dehydrogenase, conserved site Protein Sequence Similarity - InterPro Domain: IPR001295
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 Protein Sequence Similarity - InterPro Domain: IPR012135
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 1.3.5.2 Experimental - PubMed ID: 10074342
Reference: Escherichia coli 		Dec 2018
Automated Process Uncurated EC number 1.3.-.- Published Annotation - Database Name: EC2GO: GO:0016627
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.5.2.2 (metabolism; building block biosynthesis; nucleotide; pyrimidine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003201 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10807 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A7E1 Published Annotation - Swiss-Prot Accession Number: P0A7E1 Jan 2006
Automated Process Approved db xref GI:1787177 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945556 Published Annotation - Entrez Gene Database ID: 945556
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A7E1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Pyrimidine ribonucleotide biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note dihydro-orotate dehydrogenase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006221 - pyrimidine nucleotide biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74031.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005720, IPR005719
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001295
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006222 UMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012135
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006221 pyrimidine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005719
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004152 dihydroorotate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012135
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005720
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004158 dihydroorotate oxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005719
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000394 pyrD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001560 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000521 pyrD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000572 pyrD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000484 pyrD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000676 pyrD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000701 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000390 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129632 pyrD CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104473 pyrD CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001499 pyrD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002715 pyrD CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001766 pyrD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002271 pyrD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006392 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019877 pyrD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002450 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002044 pyrD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300407 pyrD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001530 pyrD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002184 pyrD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004607 pyrD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008018 pyrD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000958 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005534 pyrD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000886 pyrD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003423 pyrD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008510 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007926 pyrD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007180 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077173 pyrD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000950 pyrD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001272 pyrD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008397 pyrD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000978 pyrD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005504 pyrD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004436 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009811 pyrD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008861 pyrD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010477 pyrD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009312 pyrD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005949 pyrD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008794 pyrD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008968 pyrD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009357 pyrD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008503 pyrD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010464 pyrD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007681 pyrD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025110 pyrD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007198 pyrD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005732 pyrD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001234 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000909 pyrD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000954 pyrD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001243 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001206 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001153 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001031 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175171 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001031 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002173 pyrD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130943 pyrD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005715 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001013 pyrD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001063 pyrD CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002361 pyrD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000976 pyrD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003916 pyrD CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006319 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000693 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001278 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000722 pyrD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003481 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001434 pyrD CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002828 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009119 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003105 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288193 pyrD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004533 pyrD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062802 pyrD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001568 pyrD CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001849 pyrD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003914 pyrD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006620 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140793 pyrD CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002353 pyrD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005194 pyrD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002047 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001205 pyrD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005406 pyrD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003109 pyrD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002990 pyrD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005531 pyrD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007523 pyrD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007476 pyrD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007737 pyrD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004621 pyrD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005468 pyrD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008730 pyrD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001804 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001792 pyrD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002514 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005701 pyrD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0009015 pyrD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005209 pyrD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006401 pyrD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107326 pyrD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083576 pyrD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001202 pyrD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093738 pyrD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008400 pyrD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008182 pyrD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007589 pyrD CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004064 pyrD CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266189 pyrD CDS
Person Approved Go view Shigella boydii 227 ADV-0002530 pyrD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007784 pyrD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007187 pyrD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001036 pyrD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072046 pyrD CDS
Person Approved Go view Shigella flexneri 301 ABT-0087298 pyrD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001012 pyrD CDS
Person Approved Go view Shigella sonnei 046 ADD-0001020 pyrD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001563 VC1491 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000286 pyrD CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002848 pyrD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003008 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004764 pyrD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001356 pyrD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000945 pyrD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000656 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236998 pyrD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006097 pyrD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000872 pyrD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005537 pyrD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002035 pyrD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120026 pyrD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006551 pyrD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004500 pyrD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001503 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008278 pyrD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005043 pyrD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032492 pyrD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005192 pyrD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003075 pyrD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002732 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005848 pyrD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006540 pyrD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001511 pyrD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001835 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003131 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011402 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004433 pyrD CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 999768 to 1010778
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003189elfCCDSforward9992161001816Upstream
ABE-0003191elfGCDSforward10018071002877Upstream
ABE-0003193ycbUCDSforward10028891003431Upstream
ABE-0003195ycbVCDSforward10034391003954Upstream
ABE-0003197ycbFCDSforward10039471004657Upstream
ABE-0003201pyrDCDSforward10047681005778Matches
ABE-0003204zapCCDSforward10059521006494Downstream
ABE-0003206ycbXCDScomplement10064911007600Downstream
ABE-0003211rlmLCDSforward10078441009952Downstream
ABE-0003213uupCDSforward10099641011871Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.