Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003229 (fabA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003229 showshow history
Names
fabA JW0937 ECK0945 b0954
Product
beta-hydroxydecanoyl thioester dehydrase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1015952 1016470 519 173
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000402
EnteroFam0003229: Trusted threshold=495.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000794 (IPR000794 Beta-ketoacyl synthase) Apr 2008
Automated Process Approved IPR013114 (IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ) Apr 2008
Automated Process Approved IPR010083 (IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA) Apr 2008
Automated Process Approved IPR029069 (IPR029069 HotDog domain superfamily) Jul 2018
Automated Process Approved PF07977 (PF07977 FabA-like domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006633 fatty acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000794
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010083
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008693 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010083
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000794
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fabA Published Sequence Analysis - PubMed ID: 2832401
Reference: Escherichia coli K-12 		Jan 2007
Person Approved synonym JW0937 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0945 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0954 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product beta-hydroxydecanoyl thioester dehydrase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name beta-hydroxydecanoyl thioester dehydrase, trans-2-decenoyl-ACP isomerase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0003229: Trusted threshold=495.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000402
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR000794 Beta-ketoacyl synthase Protein Sequence Similarity - InterPro Domain: IPR000794
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF07977 FabA-like domain Protein Sequence Similarity - PFAM Model Name: PF07977
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029069 HotDog domain superfamily Protein Sequence Similarity - InterPro Domain: IPR029069
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA Protein Sequence Similarity - InterPro Domain: IPR010083
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ Protein Sequence Similarity - InterPro Domain: IPR013114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Approved EC number 5.3.3.14 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved EC number 4.2.1.59 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated MultiFun 1.5.4 (metabolism; building block biosynthesis; fatty acid and phosphatidic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003229 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A6Q3 Published Annotation - Swiss-Prot Accession Number: P0A6Q3 Jan 2006
Automated Process Approved db xref EcoGene:EG10273 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945568 Published Annotation - Entrez Gene Database ID: 945568
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1787187 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A6Q3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Fatty acid and phosphatidic acid biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved molecular interaction Interacts with the product of ydjR ASAP:5809:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Automated Process Approved note beta-hydroxydecanoyl thioester dehydrase, trans-2-decenoyl-ACP isomerase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74040.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006633 fatty acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000794
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010083
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000794
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008693 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010083
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000402 fabA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000593 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001691 fabA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001265 fabA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000201 fabA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000925 fabA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000965 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002595 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001508 fabA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002703 fabA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001775 fabA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002280 fabA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006295 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019707 fabA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002534 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002052 fabA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300443 fabA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001539 fabA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002175 fabA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004597 fabA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000967 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005526 fabA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000894 fabA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003415 fabA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008500 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077183 fabA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001038 fabA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001280 fabA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000987 fabA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005512 fabA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000011 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009823 fabA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008870 fabA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005958 fabA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009723 fabA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010894 fabA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0011096 fabA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007690 fabA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025119 fabA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007207 fabA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005741 fabA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001225 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000918 fabA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000963 fabA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001252 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001215 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001144 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001041 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175179 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001040 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002165 fabA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130952 fabA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005725 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001022 fabA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001072 fabA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002372 fabA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000985 fabA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003925 fabA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006217 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000701 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001287 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000731 fabA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003473 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001443 fabA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002819 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009128 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003115 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288202 fabA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004542 fabA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062006 fabA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001149 fabA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001646 fabA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007553 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140830 fabA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002255 fabA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005203 fabA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002039 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001214 fabA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005415 fabA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003148 fabA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003029 fabA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0009045 fabA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005540 fabA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007532 fabA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007746 fabA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004630 fabA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005477 fabA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008739 fabA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001795 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001783 fabA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002504 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005710 fabA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0009380 fabA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005218 fabA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006410 fabA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107348 fabA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083567 fabA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001213 fabA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093762 fabA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008391 fabA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008173 fabA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007598 fabA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004054 fabA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265429 fabA CDS
Person Approved Go view Shigella boydii 227 ADV-0002521 fabA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007774 fabA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001045 fabA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072056 fabA CDS
Person Approved Go view Shigella flexneri 301 ABT-0087306 fabA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001020 fabA CDS
Person Approved Go view Shigella sonnei 046 ADD-0001029 fabA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001555 VC1483 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000467 fabA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002865 fabA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003018 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004802 fabA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001366 fabA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000935 fabA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000666 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236268 fabA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006055 fabA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000886 fabA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005552 fabA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001958 fabA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120082 fabA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008474 fabA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004487 fabA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005027 fabA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032476 fabA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005179 fabA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003060 fabA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001845 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005835 fabA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006531 fabA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001522 fabA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001849 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003120 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011445 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004425 fabA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1010952 to 1021470
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003213uupCDSforward10099641011871Downstream
ABE-0285414repeat_regionforward10119191011947Downstream
ABE-0003219pqiACDSforward10120011013254Downstream
ABE-0003221pqiBCDSforward10132591014899Downstream
ABE-0003223pqiCCDSforward10148961015459Downstream
ABE-0003227rmfCDSforward10157151015882Downstream
ABE-0003229fabACDScomplement10159521016470Matches
ABE-0003233ycbZCDScomplement10165391018299Upstream
ABE-0003238matPCDSforward10184851018937Upstream
ABE-0003240ompACDScomplement10190131020053Upstream
ABE-0003244sulACDScomplement10204101020919Upstream
ABE-0003249sxyCDSforward10211381021767Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.