Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003259 (mgsA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003259 showshow history
Names
mgsA yccG mgs JW5129 ECK0954 b0963
Product
methylglyoxal synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1026557 1027015 459 153
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000411
EnteroFam0003259: Trusted threshold=408.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004363 (IPR004363 Methylglyoxal synthase) Apr 2008
Automated Process Approved IPR011607 (IPR011607 Methylglyoxal synthase-like domain) Apr 2008
Automated Process Approved IPR036914 (IPR036914 Methylglyoxal synthase-like domain superfamily) Jul 2018
Automated Process Approved PF02142 (PF02142 MGS-like domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009438 methylglyoxal metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0019242 methylglyoxal biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004363
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004363
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008929 methylglyoxal synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004363
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name mgsA Published Sequence Analysis - PubMed ID: 9489667
Reference: Escherichia coli K-12 		Jan 2007
Person Approved synonym ECK0954 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yccG Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW5129 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym mgs Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b0963 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product methylglyoxal synthase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name methylglyoxal synthase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0003259: Trusted threshold=408.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000411
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR011607 Methylglyoxal synthase-like domain Protein Sequence Similarity - InterPro Domain: IPR011607
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004363 Methylglyoxal synthase Protein Sequence Similarity - InterPro Domain: IPR004363
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02142 MGS-like domain Protein Sequence Similarity - PFAM Model Name: PF02142
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036914 Methylglyoxal synthase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036914
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 4.2.3.3 Published Annotation - Swiss-Prot Accession Number: P0A731 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.23 (metabolism; central intermediary metabolism; methylglyoxal metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12307 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A731 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945574 Published Annotation - Entrez Gene Database ID: 945574
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0003259 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87081809 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A731 Published Annotation - Swiss-Prot Accession Number: P0A731 Jan 2006
Person Approved function enzyme; Central intermediary metabolism: Pool, multipurpose conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009438 - methylglyoxal metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74049.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0019242 methylglyoxal biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004363
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009438 methylglyoxal metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004363
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008929 methylglyoxal synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004363
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000411 mgsA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000584 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001489 mgsA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001342 mgsA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000716 mgsA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001086 mgsA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000956 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002586 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001518 mgsA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002694 mgsA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001784 mgsA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002289 mgsA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005828 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018829 mgsA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003046 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002063 mgsA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001548 mgsA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002166 mgsA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004588 mgsA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009469 mgsA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000977 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005517 mgsA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000903 mgsA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003405 mgsA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008490 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006712 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077193 mgsA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001047 mgsA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001289 mgsA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008632 mgsA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010787 mgsA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000996 mgsA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005522 mgsA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004976 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008879 mgsA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007484 mgsA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009385 mgsA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005967 mgsA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010007 mgsA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009737 mgsA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010838 mgsA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010776 mgsA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009030 mgsA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007701 mgsA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025128 mgsA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007439 mgsA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005750 mgsA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001216 mgsA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000927 mgsA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000972 mgsA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001262 mgsA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001225 mgsA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001134 mgsA CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001051 mgsA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175188 mgsA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001050 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002155 mgsA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130961 mgsA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005735 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001032 mgsA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001081 mgsA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002381 mgsA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000994 mgsA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003934 mgsA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007561 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000710 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004435 mgsA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000740 mgsA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003463 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001452 mgsA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002810 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009137 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003124 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288212 mgsA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004551 mgsA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062015 mgsA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001184 mgsA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001651 mgsA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003304 mgsA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007543 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140848 mgsA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005212 mgsA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002024 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001223 mgsA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005424 mgsA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003177 mgsA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003057 mgsA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008507 mgsA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005549 mgsA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007541 mgsA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007970 mgsA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007757 mgsA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004639 mgsA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005486 mgsA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008748 mgsA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001786 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001774 mgsA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002494 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005719 mgsA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007796 mgsA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005227 mgsA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006419 mgsA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107365 mgsA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083558 mgsA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001223 mgsA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093794 mgsA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008382 mgsA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008029 mgsA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008945 mgsA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004045 mgsA CDS
Person Approved Go view Shigella boydii 227 ADV-0002512 mgsA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007764 mgsA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004937 mgsA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001057 mgsA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072068 mgsA CDS
Person Approved Go view Shigella flexneri 301 ABT-0087316 mgsA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001032 mgsA CDS
Person Approved Go view Shigella sonnei 046 ADD-0001038 mgsA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003601 VCA0711 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003598 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004824 mgsA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001375 mgsA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000926 mgsA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000674 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237464 mgsA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007325 mgsA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000897 mgsA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005562 mgsA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001948 mgsA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120112 mgsA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008464 mgsA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004477 mgsA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003662 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009593 mgsA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005017 mgsA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032464 mgsA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005169 mgsA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003049 mgsA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001834 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008640 mgsA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006519 mgsA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001531 mgsA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001859 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003109 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011479 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004417 mgsA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21975mutantTn5 InsertionRequest the StrainABE-0003259mgsAmgsA::Tn5KAN-I-SceI at position 293 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1021557 to 1032015
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003249sxyCDSforward10211381021767Downstream
ABE-0003251yccSCDScomplement10217301023883Downstream
ABE-0003253yccFCDScomplement10239021024348Downstream
ABE-0003257helDCDSforward10244711026525Downstream
ABE-0003259mgsACDScomplement10265571027015Matches
ABE-0003262yccTCDScomplement10271111027773Upstream
ABE-0003267yccUCDSforward10279461028359Upstream
ABE-0285415repeat_regionforward10283661028389Upstream
ABE-0003269hspQCDScomplement10284041028721Upstream
ABE-0003272rlmICDScomplement10287791029969Upstream
ABE-0003276yccXCDSforward10300641030342Upstream
ABE-0003278tusECDScomplement10303391030668Upstream
ABE-0003280yccACDScomplement10307591031418Upstream
ABE-0003283serTtRNAcomplement10316251031712Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.