Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003300 (appC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003300 showshow history
Names
appC cbdA JW0960 ECK0969 cyxA b0978
Product
cytochrome bd-II ubiquinol oxidase subunit I
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1037740 1039284 1545 515
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002585 (IPR002585 Cytochrome ubiquinol oxidase subunit 1) Apr 2008
Automated Process Approved PF01654 (PF01654 Cytochrome bd terminal oxidase subunit I) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002585
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0019646 aerobic electron transport chain GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002585
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0070069 cytochrome complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002585
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002585
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002585
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002585
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name appC Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK0969 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0960 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym cbdA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym cyxA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b0978 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product cytochrome bd-II ubiquinol oxidase subunit I Published Annotation - EcoCyc Accession Number: EG11380
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name cytochrome oxidase bd-II, subunit I Experimental - PubMed ID: 8626304 Jan 2006
Person Approved alternate product name cytochrome bd-II oxidase, subunit I Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR002585 Cytochrome ubiquinol oxidase subunit 1 Protein Sequence Similarity - InterPro Domain: IPR002585
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01654 Cytochrome bd terminal oxidase subunit I Protein Sequence Similarity - PFAM Model Name: PF01654
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.10.3.- Published Annotation - Swiss-Prot Accession Number: P26459 Feb 2006
Person Uncurated MultiFun 1.4.2 (metabolism; energy production/transport; electron acceptor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787212 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003300 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11380 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P26459 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P26459 Published Annotation - Swiss-Prot Accession Number: P26459 Jan 2005
Automated Process Approved db xref GeneID:945585 Published Annotation - Entrez Gene Database ID: 945585
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function putative enzyme; Energy metabolism, carbon: Electron transport Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74063.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002585
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0019646 aerobic electron transport chain GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002585
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002585
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0070069 cytochrome complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002585
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002585
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002585
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266910 cydA CDS
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000034 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000038 cydA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000042 cydA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001081 cydA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000034 cydA CDS
Ortholog
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001581 cydA_1 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000992 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000917 appC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003391 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008471 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077213 appC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001063 appC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001307 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001011 appC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005536 appC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006054 appC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025209 appC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007454 appC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005764 appC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001202 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000941 appC CDS
Automated Process Approved Go view Escherichia coli K-12 W3110 ADY-0000987 appC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001276 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001268 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001120 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001070 CDS
Person Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175207 pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0001066 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002138 appC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131055 appC CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001049 appC CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0005519 appC pseudogene
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001081 appC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108861 appC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0285030 appC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095830 appC CDS
Automated Process Approved Go view Shigella boydii 227 ADV-0002497 appC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007749 appC CDS
Automated Process Approved Go view Shigella dysenteriae 197 ADU-0001072 appC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072083 appC CDS
Person Approved Go view Shigella flexneri 301 ABT-0087332 appC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001046 appC CDS
Person Approved Go view Shigella sonnei 046 ADD-0001057 appC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1032740 to 1044284
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003286hyaACDSforward10321391033257Upstream
ABE-0003288hyaBCDSforward10332541035047Upstream
ABE-0003290hyaCCDSforward10350661035773Upstream
ABE-0003292hyaDCDSforward10357701036357Upstream
ABE-0003294hyaECDSforward10363541036752Upstream
ABE-0003296hyaFCDSforward10367491037606Upstream
ABE-0003300appCCDSforward10377401039284Matches
ABE-0003302appBCDSforward10392961040432Downstream
ABE-0285178appXCDSforward10404451040537Downstream
ABE-0285416repeat_regionforward10405431040578Downstream
ABE-0003305appACDSforward10406171041915Downstream
ABE-0285417repeat_regionforward10419851042018Downstream
ABE-0003309etkCDScomplement10420301044210Downstream
ABE-0003312etpCDScomplement10442301044676Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.