Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003302 (appB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003302 showshow history
Names
appB cbdB JW0961 ECK0970 cyxB b0979
Product
cytochrome bd-II ubiquinol oxidase subunit II
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1039296 1040432 1137 379
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003317 (IPR003317 Cytochrome ubiquinol oxidase subunit 2) Apr 2008
Automated Process Approved PF02322 (PF02322 Cytochrome bd terminal oxidase subunit II) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003317
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003317
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003317
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name appB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym cyxB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Automated Process Approved synonym cbdB Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW0961 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0970 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0979 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product cytochrome bd-II ubiquinol oxidase subunit II Published Annotation - EcoCyc Accession Number: EG11379
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name cytochrome oxidase bd-II, subunit II Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name probable third cytochrome oxidase, subunit II Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name cytochrome bd-II oxidase, subunit II Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family PF02322 Cytochrome bd terminal oxidase subunit II Protein Sequence Similarity - PFAM Model Name: PF02322
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003317 Cytochrome ubiquinol oxidase subunit 2 Protein Sequence Similarity - InterPro Domain: IPR003317
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 1.10.3.- Published Annotation - Swiss-Prot Accession Number: P26458 Feb 2006
Person Uncurated MultiFun 1.4.2 (metabolism; energy production/transport; electron acceptor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11379 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787213 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947547 Published Annotation - Entrez Gene Database ID: 947547
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P26458 Published Annotation - Swiss-Prot Accession Number: P26458 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P26458 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003302 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Energy metabolism, carbon: Electron transport Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note probable third cytochrome oxidase, subunit II; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74064.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003317
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003317
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003317
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006675 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003197 appB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003593 appB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003156 appB CDS
Ortholog
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001580 cydB_1 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003597 appB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007303 appB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000993 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005500 appB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000918 appB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003390 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008470 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009651 cydB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006729 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077214 appB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001064 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001308 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008544 appB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010311 appB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001012 appB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005537 appB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005053 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008963 appB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007568 appB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005585 appB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006055 appB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009650 appB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009822 appB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006257 appB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006910 appB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008788 appB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008333 appB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007788 appB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025210 appB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007455 appB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005765 appB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001201 CDS
Automated Process Uncurated Go view Escherichia coli K-12 DH10B AEC-0004435 appB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000988 appB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001277 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001267 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001119 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001071 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175208 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001067 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002137 appB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131056 appB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003448 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001050 appB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005517 cydB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001192 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0005521 appB pseudogene
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005797 cydB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004059 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004020 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004660 cydB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006353 cydB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005293 cydB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005347 cydB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008116 cydB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005430 cydB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006296 cydB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004488 cydB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001082 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001080 appB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001437 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006543 cydB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008640 cydB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006019 cydB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007094 cydB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108864 appB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082797 appB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002170 CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095833 appB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007535 cydB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006859 cydB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007407 cydB CDS
Person Approved Go view Shigella boydii 227 ADV-0002496 appB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007748 appB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004920 appB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001073 appB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072084 appB CDS
Person Approved Go view Shigella flexneri 301 ABT-0087333 appB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001047 appB CDS
Person Approved Go view Shigella sonnei 046 ADD-0001058 appB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20079mutantTn5 InsertionRequest the StrainABE-0003302appBappB::Tn5KAN-2 at position 1071 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1034296 to 1045432
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003288hyaBCDSforward10332541035047Upstream
ABE-0003290hyaCCDSforward10350661035773Upstream
ABE-0003292hyaDCDSforward10357701036357Upstream
ABE-0003294hyaECDSforward10363541036752Upstream
ABE-0003296hyaFCDSforward10367491037606Upstream
ABE-0003300appCCDSforward10377401039284Upstream
ABE-0003302appBCDSforward10392961040432Matches
ABE-0285178appXCDSforward10404451040537Downstream
ABE-0285416repeat_regionforward10405431040578Downstream
ABE-0003305appACDSforward10406171041915Downstream
ABE-0285417repeat_regionforward10419851042018Downstream
ABE-0003309etkCDScomplement10420301044210Downstream
ABE-0003312etpCDScomplement10442301044676Downstream
ABE-0003317gfcECDScomplement10446641045803Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.