Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003305 (appA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003305 showshow history
Names
appA JW0963 ECK0971 b0980
Product
phosphoanhydride phosphorylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1040617 1041915 1299 433
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000560 (IPR000560 Histidine phosphatase superfamily, clade-2) Apr 2008
Automated Process Approved IPR029033 (IPR029033 Histidine phosphatase superfamily) Jul 2018
Automated Process Approved PF00328 (PF00328 Histidine phosphatase superfamily (branch 2)) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006793 phosphorus metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0042594 response to starvation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003993 acid phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000560
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name appA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK0971 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0963 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0980 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product phosphoanhydride phosphorylase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name phosphoanhydride phosphorylase; pH 2.5 acid phosphatase; periplasmic Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name phytase and phosphoanhydride phosphorylase (pH 2.5 acid phosphatase) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family PF00328 Histidine phosphatase superfamily (branch 2) Protein Sequence Similarity - PFAM Model Name: PF00328
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029033 Histidine phosphatase superfamily Protein Sequence Similarity - InterPro Domain: IPR029033
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000560 Histidine phosphatase superfamily, clade-2 Protein Sequence Similarity - InterPro Domain: IPR000560
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 3.1.3.26 Published Annotation - Swiss-Prot Accession Number: P07102 Feb 2006
Person Approved EC number 3.1.3.2 Published Annotation - Swiss-Prot Accession Number: P07102 Feb 2006
Person Uncurated MultiFun 5.5.3 (cell processes; adaptation to stress; starvation response) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.8.1 (metabolism; metabolism of other compounds; phosphorous metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787215 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946206 Published Annotation - Entrez Gene Database ID: 946206
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P07102 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003305 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10049 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P07102 Published Annotation - Swiss-Prot Accession Number: P07102 Jan 2005
Person Approved function enzyme; Central intermediary metabolism: Pool, multipurpose conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note phosphoanhydride phosphorylase; pH 2.5 acid phosphatase; periplasmic; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0006793 - phosphorus metabolic process; GO_process: GO:0042594 - response to starvation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74065.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0042594 response to starvation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006793 phosphorus metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003993 acid phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000560
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000161 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003102 appA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003334 appA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001429 appA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003334 appA CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003598 appA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007302 appA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000994 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005499 appA CDS
Person Uncurated Go view Escherichia coli ABU 83972 (UPEC) ANS-0003879 appA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000919 appA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003389 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008468 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009654 appA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006730 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077215 appA CDS
Person Uncurated Go view Escherichia coli CI5 (UPEC) AZX-0001477 CDS
Person Uncurated Go view Escherichia coli D i2 (UPEC) AZZ-0001042 appA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001065 appA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001309 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008543 appA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010309 appA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001013 appA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005539 appA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005055 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009921 appA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008964 appA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007569 appA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005584 appA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006056 appA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009651 appA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009823 appA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006258 appA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006911 appA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008789 appA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008334 appA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007789 appA CDS
Person Uncurated Go view Escherichia coli EC958 (UPEC) BCU-0001117 appA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025211 appA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007456 appA_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005767 appA CDS
Person Uncurated Go view Escherichia coli IAI39 (UPEC) AIB-0002240 appA CDS
Person Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001199 CDS
Person Uncurated Go view Escherichia coli JJ1886 (UPEC) BCY-0001081 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000942 appA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000989 appA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001279 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001265 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001117 CDS
Person Uncurated Go view Escherichia coli NA114 (UPEC) BDB-0001082 appA CDS
Person Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175210 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001068 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002136 appA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131057 appA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003450 CDS
Person Uncurated Go view Escherichia coli UMN026 (UPEC) AIA-0001192 appA CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001052 appA CDS
Person Uncurated Go view Escherichia coli YD786 (UPEC) BFM-0000565 CDS
Person Approved Go view Shigella boydii 227 ADV-0002494 appA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007747 appA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004918 appA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001075 appA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072086 appA CDS
Person Approved Go view Shigella flexneri 301 ABT-0087334 appA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001048 appA CDS
Person Approved Go view Shigella sonnei 046 ADD-0001060 appA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002660 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007455 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000409 appA_1 pseudogene
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003264 appA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003232 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238561 appA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006956 appA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002272 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005024 appA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001752 CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120769 appA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004779 appA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005709 appA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002870 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007830 appA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007608 appA CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031505 appA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007646 appA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002393 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002162 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007985 appA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005589 appA CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002508 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002991 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002029 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1035617 to 1046915
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003290hyaCCDSforward10350661035773Upstream
ABE-0003292hyaDCDSforward10357701036357Upstream
ABE-0003294hyaECDSforward10363541036752Upstream
ABE-0003296hyaFCDSforward10367491037606Upstream
ABE-0003300appCCDSforward10377401039284Upstream
ABE-0003302appBCDSforward10392961040432Upstream
ABE-0285178appXCDSforward10404451040537Upstream
ABE-0285416repeat_regionforward10405431040578Upstream
ABE-0003305appACDSforward10406171041915Matches
ABE-0285417repeat_regionforward10419851042018Downstream
ABE-0003309etkCDScomplement10420301044210Downstream
ABE-0003312etpCDScomplement10442301044676Downstream
ABE-0003317gfcECDScomplement10446641045803Downstream
ABE-0003319gfcDCDScomplement10458491047945Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.