Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003372 (torA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003372 showshow history
Names
torA JW0982 ECK0988 b0997
Product
trimethylamine N-oxide reductase 1
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1059256 1061802 2547 849
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006655 (IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site) Apr 2008
Automated Process Approved IPR006656 (IPR006656 Molybdopterin oxidoreductase) Apr 2008
Automated Process Approved IPR006657 (IPR006657 Molybdopterin dinucleotide-binding domain) Apr 2008
Automated Process Approved IPR011887 (IPR011887 Trimethylamine-N-oxide reductase TorA) Apr 2008
Automated Process Approved IPR006311 (IPR006311 Twin-arginine translocation pathway, signal sequence) Apr 2008
Automated Process Approved IPR006658 (IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase) Apr 2008
Automated Process Approved IPR009010 (IPR009010 Aspartate decarboxylase-like domain superfamily) Apr 2008
Automated Process Approved PF01568 (PF01568 Molydopterin dinucleotide binding domain) Jul 2018
Automated Process Approved PF00384 (PF00384 Molybdopterin oxidoreductase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006657, IPR006656, IPR006658
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0042597 periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011887
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0050626 trimethylamine-N-oxide reductase (cytochrome c) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0043546 molybdopterin cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006657
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0030151 molybdenum ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006657
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name torA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK0988 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0982 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0997 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product trimethylamine N-oxide reductase 1 Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name trimethylamine N-oxide reductase system I, with TorC Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name trimethylamine N-oxide reductase subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site Protein Sequence Similarity - InterPro Domain: IPR006655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006656 Molybdopterin oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR006656
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009010 Aspartate decarboxylase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR009010
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01568 Molydopterin dinucleotide binding domain Protein Sequence Similarity - PFAM Model Name: PF01568
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00384 Molybdopterin oxidoreductase Protein Sequence Similarity - PFAM Model Name: PF00384
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase Protein Sequence Similarity - InterPro Domain: IPR006658
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006311 Twin-arginine translocation pathway, signal sequence Protein Sequence Similarity - InterPro Domain: IPR006311
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006657 Molybdopterin dinucleotide-binding domain Protein Sequence Similarity - InterPro Domain: IPR006657
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011887 Trimethylamine-N-oxide reductase TorA Protein Sequence Similarity - InterPro Domain: IPR011887
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 1.7.2.3 Published Annotation - Swiss-Prot Accession Number: P33225 Feb 2006
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.2 (metabolism; energy production/transport; electron acceptor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P33225 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P33225 Published Annotation - Swiss-Prot Accession Number: P33225 Jan 2005
Automated Process Approved db xref EcoGene:EG11814 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787231 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003372 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946267 Published Annotation - Entrez Gene Database ID: 946267
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Energy metabolism, carbon: Anaerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note trimethylamine N-oxide reductase subunit; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74082.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006657, IPR006656, IPR006658
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0042597 periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011887
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0050626 trimethylamine-N-oxide reductase (cytochrome c) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0043546 molybdopterin cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006657
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0030151 molybdenum ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006657
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000061 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000020 torZ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000023 torZ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000028 torZ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000008 torZ CDS
Ortholog
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001889 torZ_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008261 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001004 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000925 torA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003380 torA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008442 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077227 torA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001081 torA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001326 torA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001098 torA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005557 torA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006073 torA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025227 torA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007466 torA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005785 torA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001190 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000959 torA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001008 torA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001297 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001291 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001247 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001085 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175220 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001085 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002126 torA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131073 torA CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001064 torA CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004373 torA CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003671 torA CDS
Person Uncurated Go view Salmonella Typhi CT18 ABX-0113346 torA CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085422 torA CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101803 torA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264797 torA CDS
Person Uncurated Go view Shigella boydii 227 ADV-0002478 torA pseudogene
Person Uncurated Go view Shigella dysenteriae 197 ADU-0001091 torA pseudogene
Person Approved Go view Shigella flexneri 2457T ABQ-0072106 torA pseudogene
Person Approved Go view Shigella flexneri 301 ABT-0087351 torA pseudogene
Person Approved Go view Shigella sonnei 046 ADD-0001079 torA pseudogene
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001765 VC1692 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20082mutantTn5 InsertionRequest the StrainABE-0003372torAtorA::Tn5KAN-2 at position 973 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1054256 to 1066802
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003354torSCDScomplement10534341056178Upstream
ABE-0003360torTCDSforward10562611057289Upstream
ABE-0003362torRCDScomplement10572621057954Upstream
ABE-0003370torCCDSforward10580841059256Overlaps Upstream
ABE-0003372torACDSforward10592561061802Matches
ABE-0003374torDCDSforward10617991062398Overlaps Downstream
ABE-0285418repeat_regionforward10624071062540Downstream
ABE-0003377cbpMCDScomplement10625501062855Downstream
ABE-0003379cbpACDScomplement10628551063775Downstream
ABE-0003384yccECDSforward10640361065292Downstream
ABE-0003388agpCDSforward10655851066826Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.