Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003388 (agp) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003388 showshow history
Names
agp JW0987 ECK0993 b1002
Product
glucose-1-phosphatase/inositol phosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1065585 1066826 1242 414
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000560 (IPR000560 Histidine phosphatase superfamily, clade-2) Apr 2008
Automated Process Approved IPR029033 (IPR029033 Histidine phosphatase superfamily) Jul 2018
Automated Process Approved PF00328 (PF00328 Histidine phosphatase superfamily (branch 2)) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006006 glucose metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003993 acid phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000560
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name agp Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Person Approved synonym JW0987 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0993 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1002 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glucose-1-phosphatase/inositol phosphatase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name glucose-1-phosphatase Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name periplasmic glucose-1-phosphatase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Protein Family
Automated Process Approved protein family IPR029033 Histidine phosphatase superfamily Protein Sequence Similarity - InterPro Domain: IPR029033
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF00328 Histidine phosphatase superfamily (branch 2) Protein Sequence Similarity - PFAM Model Name: PF00328
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR000560 Histidine phosphatase superfamily, clade-2 Protein Sequence Similarity - InterPro Domain: IPR000560
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Approved EC number 3.1.3.10 Published Annotation - Swiss-Prot Accession Number: P19926 Feb 2006
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.9 (metabolism; central intermediary metabolism; glucose metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P19926 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P19926 Published Annotation - Swiss-Prot Accession Number: P19926 Jan 2005
Automated Process Approved db xref ASAP:ABE-0003388 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:945773 Published Annotation - Entrez Gene Database ID: 945773
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref GI:1787237 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG10033 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Pool, multipurpose conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note periplasmic glucose-1-phosphatase; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0006006 - glucose metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC74087.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006006 glucose metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003993 acid phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000560
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000161 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002603 agp CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002417 agp CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001429 appA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002264 agp CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001532 agp CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002608 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001848 agp CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002327 agp CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002113 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300491 agp CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002156 agp CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003625 agp CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007281 agp CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001010 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000929 agp CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003376 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008436 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008016 agp CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007128 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081821 agp CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001087 agp CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001331 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009449 agp CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008298 agp CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001102 agp CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005563 agp CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005078 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009947 agp CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008987 agp CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007592 agp CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005561 agp CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006080 agp CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006349 agp CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009848 agp CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006281 agp CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006935 agp CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008812 agp CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008357 agp CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007813 agp CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025233 agp CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007470 agp CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005792 agp CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001346 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000963 agp CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001013 agp CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001302 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001296 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001252 CDS
Person Uncurated Go view Escherichia coli Nissle 1917 AML-0001089 pseudogene
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175224 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001090 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002121 agp CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131079 agp CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003474 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001068 agp CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002815 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001031 agp CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003987 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000750 agp CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003455 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001462 agp CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002800 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009145 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288220 agp CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004282 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005254 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001971 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001268 agp CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005465 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003172 agp CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008466 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005591 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007584 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008012 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007798 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004681 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005581 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008787 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001745 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001733 agp CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002445 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005759 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007755 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005269 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006461 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107446 agp CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083517 agp CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001272 agp CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093914 agp CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008337 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007985 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007829 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002619 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001100 agp CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072115 agp CDS
Person Approved Go view Shigella flexneri 301 ABT-0087356 agp CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001075 agp CDS
Person Approved Go view Shigella sonnei 046 ADD-0001087 agp CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001022 agp CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003870 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000673 agp CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001027 agp CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003519 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011572 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004381 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20084mutantTn5 InsertionRequest the StrainABE-0003388agpagp::Tn5KAN-2 at position 327 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1060585 to 1071826
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003372torACDSforward10592561061802Upstream
ABE-0003374torDCDSforward10617991062398Upstream
ABE-0285418repeat_regionforward10624071062540Upstream
ABE-0003377cbpMCDScomplement10625501062855Upstream
ABE-0003379cbpACDScomplement10628551063775Upstream
ABE-0003384yccECDSforward10640361065292Upstream
ABE-0003388agpCDSforward10655851066826Matches
ABE-0003390yccJCDScomplement10668641067091Downstream
ABE-0003392wrbACDScomplement10671121067708Downstream
ABE-0285039ymdFCDSforward10680811068254Downstream
ABE-0285419repeat_regionforward10683541068451Downstream
ABE-0003401rutGCDScomplement10685111069839Downstream
ABE-0003403rutFCDScomplement10698601070354Downstream
ABE-0003407rutECDScomplement10703651070955Downstream
ABE-0003410rutDCDScomplement10709651071765Downstream
ABE-0003412rutCCDScomplement10717731072159Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.