Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003424 (putA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003424 showshow history
Names
putA putC JW0999 ECK1005 poaA b1014
Product
multifunctional proline dehydrogenase, delta-1-pyrroline-5-carboxylate dehydrogenase, and DNA-binding transcriptional regulator
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1074920 1078882 3963 1321
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000416
EnteroFam0003424: Trusted threshold=2479.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR005933 (IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3) Apr 2008
Automated Process Approved IPR002872 (IPR002872 Proline dehydrogenase domain) Apr 2008
Automated Process Approved IPR015590 (IPR015590 Aldehyde dehydrogenase domain) Apr 2008
Automated Process Approved IPR010985 (IPR010985 Ribbon-helix-helix) Apr 2008
Automated Process Approved IPR011350 (IPR011350 (DEPRECATED) Bifunctional proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (PutA)) Apr 2008
Automated Process Approved IPR024082 (IPR024082 Proline dehydrogenase PutA, domain II) Jul 2018
Automated Process Approved IPR029041 (IPR029041 FAD-linked oxidoreductase-like) Jul 2018
Automated Process Approved IPR016161 (IPR016161 Aldehyde/histidinol dehydrogenase) Jul 2018
Automated Process Approved IPR024089 (IPR024089 Proline dehydrogenase PutA, domain I/II) Jul 2018
Automated Process Approved PF00171 (PF00171 Aldehyde dehydrogenase family) Jul 2018
Automated Process Approved PF14850 (PF14850 DNA-binding domain of Proline dehydrogenase) Jul 2018
Automated Process Approved PF01619 (PF01619 Proline dehydrogenase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0016481 (DEPRECATED) negative regulation of transcription GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011350
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR024082, IPR005933, IPR016161, IPR024089
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006560 proline metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011350
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0006355 regulation of transcription, DNA-templated GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010985
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006562 proline catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002872
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006350 (DEPRECATED) transcription Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006561 proline biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005933
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006537 glutamate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002872
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016564 (OBSOLETE) transcription repressor activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011350
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003677 DNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011350
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO molecular function GO:0016564 (OBSOLETE) transcription repressor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003842 1-pyrroline-5-carboxylate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005933
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004657 proline dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002872
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name putA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK1005 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0999 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym poaA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Automated Process Approved synonym putC Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b1014 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product multifunctional proline dehydrogenase, delta-1-pyrroline-5-carboxylate dehydrogenase, and DNA-binding transcriptional regulator Published Sequence Analysis - PubMed ID: 7966312
Reference: Escherichia coli K-12 		Jan 2007
Automated Process Approved alternate product name fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name multifunctional: proline dehydrogenase (in membrane); pyrroline-5-carboxylate dehydrogenase (in membrane); transcriptional repressor of proline synthesis (in cytoplasm) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name proline dehydrogenase, P5C dehydrogenase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0003424: Trusted threshold=2479.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000416
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 Protein Sequence Similarity - InterPro Domain: IPR005933
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029041 FAD-linked oxidoreductase-like Protein Sequence Similarity - InterPro Domain: IPR029041
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR016161 Aldehyde/histidinol dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR024089 Proline dehydrogenase PutA, domain I/II Protein Sequence Similarity - InterPro Domain: IPR024089
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00171 Aldehyde dehydrogenase family Protein Sequence Similarity - PFAM Model Name: PF00171
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01619 Proline dehydrogenase Protein Sequence Similarity - PFAM Model Name: PF01619
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR024082 Proline dehydrogenase PutA, domain II Protein Sequence Similarity - InterPro Domain: IPR024082
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002872 Proline dehydrogenase domain Protein Sequence Similarity - InterPro Domain: IPR002872
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015590 Aldehyde dehydrogenase domain Protein Sequence Similarity - InterPro Domain: IPR015590
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010985 Ribbon-helix-helix Protein Sequence Similarity - InterPro Domain: IPR010985
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011350 (DEPRECATED) Bifunctional proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (PutA) Protein Sequence Similarity - InterPro Domain: IPR011350
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF14850 DNA-binding domain of Proline dehydrogenase Protein Sequence Similarity - PFAM Model Name: PF14850
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated EC number 1.2.1.88 Protein Sequence Similarity - Swiss-Prot Accession Number: P09546
Reference: Escherichia coli K-12 		Mar 2014
Person Uncurated EC number 1.5.5.2 Protein Sequence Similarity - Swiss-Prot Accession Number: P09546
Reference: Escherichia coli K-12 		Mar 2014
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.3 (metabolism; carbon utilization; amino acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.2.2 (information transfer; RNA related; transcription related) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 3.1.2.3 (regulation; type of regulation; transcriptional level; repressor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P09546 Published Annotation - Swiss-Prot Accession Number: P09546 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P09546 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945600 Published Annotation - Entrez Gene Database ID: 945600
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1787250 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003424 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10801 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Amino acids Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note proline dehydrogenase, P5C dehydrogenase; GO_component: GO:0005737 - cytoplasm; GO_function: GO:0016564 - transcription repressor activity; GO_process: GO:0009063 - cellular amino acid catabolic process; GO_process: GO:0006350 - transcription Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74099.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006560 proline metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011350
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0016481 (DEPRECATED) negative regulation of transcription GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011350
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006562 proline catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002872
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR024082, IPR005933, IPR016161, IPR024089
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006537 glutamate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002872
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006350 (DEPRECATED) transcription Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006561 proline biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005933
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0006355 regulation of transcription, DNA-templated GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010985
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003677 DNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011350
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016564 (OBSOLETE) transcription repressor activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011350
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004657 proline dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002872
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0016564 (OBSOLETE) transcription repressor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003842 1-pyrroline-5-carboxylate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005933
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000070 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001157 putA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000924 putA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001953 putA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001564 putA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002361 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001546 putA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002599 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001854 putA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002334 putA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004556 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0014955 putA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004022 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002127 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302549 putA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002306 putA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001487 putA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003644 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007269 putA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001022 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005466 putA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000940 putA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003363 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008423 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008028 putA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007140 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077245 putA CDS
Person Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001099 putA pseudogene
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001343 putA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009438 putA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008310 putA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001116 putA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005575 putA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005089 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009958 putA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008998 putA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007603 putA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005550 putA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006091 putA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006360 putA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006292 putA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006946 putA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006396 putA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008368 putA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007824 putA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025318 putA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007482 putA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005806 putA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001334 putA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000974 putA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001025 putA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001315 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001309 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001265 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001102 putA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001102 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002110 putA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131188 putA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000606 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001080 putA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001517 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003267 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001045 putA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004002 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008854 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001643 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003383 putA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001595 putA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002465 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002323 putA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001834 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010103 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001535 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0285700 putA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005508 putA CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064548 putA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003003 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003457 putA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009305 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0141271 putA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005095 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005261 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001966 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001275 putA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005471 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003310 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003187 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008460 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005597 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007590 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008019 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007805 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004688 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005587 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008793 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001739 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001727 putA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002436 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005766 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007749 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005276 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006468 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107456 putA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083511 putA CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0285052 putA pseudogene
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008330 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007978 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002855 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267416 CDS
Person Approved Go view Shigella boydii 227 ADV-0002264 putA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007716 putA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004857 putA CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0285941 putA pseudogene
Person Approved Go view Shigella sonnei 046 ADD-0001112 putA CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000613 putA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002979 putA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001833 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005672 poaA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000330 putA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000393 putA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002623 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237978 putA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006150 putA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001486 putA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004321 putA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001569 putA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121417 putA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007293 putA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006163 putA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000870 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008124 putA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007004 putA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032181 putA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006151 putA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002733 putA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001526 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007340 putA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006246 putA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001799 putA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002195 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002810 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011591 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004374 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1069920 to 1083882
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003403rutFCDScomplement10698601070354Downstream
ABE-0003407rutECDScomplement10703651070955Downstream
ABE-0003410rutDCDScomplement10709651071765Downstream
ABE-0003412rutCCDScomplement10717731072159Downstream
ABE-0003414rutBCDScomplement10721711072863Downstream
ABE-0003416rutACDScomplement10728631074011Downstream
ABE-0003422rutRCDSforward10742421074880Downstream
ABE-0285420repeat_regionforward10748851074912Downstream
ABE-0003424putACDScomplement10749201078882Matches
ABE-0285820ymdGCDSforward10791201079146Upstream
ABE-0003433putPCDSforward10793051080813Upstream
ABE-0285421repeat_regionforward10811121081145Upstream
ABE-0003441efeU_1CDSpforward10813561081466Upstream
ABE-0285091efeUpseudogeneforward10813561082185Upstream
ABE-0003443efeU_2CDSpforward10814541082185Upstream
ABE-0003448efeOCDSforward10822431083370Upstream
ABE-0003451efeBCDSforward10833761084647Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.