Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003433 (putP) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003433 showshow history
Names
putP putC JW1001 ECK1006 b1015
Product
proline:sodium symporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1079305 1080813 1509 503
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000417
EnteroFam0003433: Trusted threshold=1361.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001734 (IPR001734 Sodium/solute symporter) Apr 2008
Automated Process Approved IPR011851 (IPR011851 Sodium/proline symporter) Apr 2008
Automated Process Approved PF00474 (PF00474 Sodium:solute symporter family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001734
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0015824 proline transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006814 sodium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001734
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0031402 sodium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0005298 proline:sodium symporter activity GO Inferred from Direct Assay - PubMed ID: 3512540
Reference: Escherichia coli K-12 		Apr 2008
Automated Process Approved GO molecular function GO:0005298 proline:sodium symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name putP Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Automated Process Approved synonym putC Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW1001 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1006 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1015 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product proline:sodium symporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name major sodium/proline symporter Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name major sodium:proline symporter (SSS family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0003433: Trusted threshold=1361.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000417
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00474 Sodium:solute symporter family Protein Sequence Similarity - PFAM Model Name: PF00474
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011851 Sodium/proline symporter Protein Sequence Similarity - InterPro Domain: IPR011851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001734 Sodium/solute symporter Protein Sequence Similarity - InterPro Domain: IPR001734
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.5.1.4 (metabolism; building block biosynthesis; amino acids; proline) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.139 (transport; substrate; Na+/proline) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.21 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Solute:Sodium Symporter (SSS) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10802 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003433 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P07117 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P07117 Published Annotation - Swiss-Prot Accession Number: P07117 Jan 2005
Automated Process Approved db xref GeneID:945602 Published Annotation - Entrez Gene Database ID: 945602
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1787251 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Cations Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note major sodium/proline symporter; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_function: GO:0005298 - proline:sodium symporter activity; GO_process: GO:0006561 - proline biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74100.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001734
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0015824 proline transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006814 sodium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0005298 proline:sodium symporter activity GO Inferred from Direct Assay - PubMed ID: 3512540
Reference: Escherichia coli K-12 		Apr 2008
Automated Process Approved GO molecular function GO:0031402 sodium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005298 proline:sodium symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001734
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000417 putP CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000826 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001266 putP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000696 putP CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001553 putP CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000346 putP CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002360 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002417 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001548 putP CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002598 putP CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001855 putP CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002335 putP CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004555 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014954 putP CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004023 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002128 putP CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302545 putP CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002305 putP CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001488 putP CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003645 putP CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007266 putP CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001024 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005463 putP CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000941 putP CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003360 putP CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008422 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008031 putP CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007143 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077248 putP CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001102 putP CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001346 putP CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009435 putP CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008313 putP CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001117 putP CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005578 putP CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005092 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009961 putP CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009000 putP CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007606 putP CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005547 putP CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006093 putP CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006362 putP CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006295 putP CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006949 putP CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006393 putP CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008371 putP CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007827 putP CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025319 putP CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007485 putP CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005808 putP CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001332 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000975 putP CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001026 putP CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001318 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001311 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001268 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001105 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001104 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002107 putP CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131189 putP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000603 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001082 putP CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001519 putP CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003266 putP CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001046 putP CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004004 putP CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008855 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001642 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003384 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001594 putP CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002466 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002322 putP CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001835 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010102 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001536 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0285699 putP CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005507 putP CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064549 putP CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002487 putP CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002251 putP CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003459 putP CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009306 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0141275 putP CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005094 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005263 putP CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001965 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001277 putP CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005473 putP CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003315 putP CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003192 putP CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008458 putP CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005599 putP CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007592 putP CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008021 putP CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007807 putP CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004690 putP CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005589 putP CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008794 putP CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001738 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001726 putP CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002433 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005768 putP CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007747 putP CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005278 putP CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006470 putP CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107461 putP CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083510 putP CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001283 putP CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0093940 putP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008328 putP CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007976 putP CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009162 putP CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002856 putP CDS
Person Approved Go view Shigella boydii 227 ADV-0002263 putP CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007714 putP CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004855 putP CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001112 putP CDS
Person Approved Go view Shigella sonnei 046 ADD-0001113 putP CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003964 VCA1071 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002978 putP CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001834 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005677 putP CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000329 putP CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000392 putP CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002624 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237962 putP CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006152 putP CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001488 putP CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004324 putP CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001567 putP CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121424 putP CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007295 putP CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006161 putP CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000872 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008126 putP CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007001 putP CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032179 putP CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006149 putP CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002731 putP CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001524 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007338 putP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006243 putP CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001800 putP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002197 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002808 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011600 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004373 putP CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1074305 to 1085813
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003422rutRCDSforward10742421074880Upstream
ABE-0285420repeat_regionforward10748851074912Upstream
ABE-0003424putACDScomplement10749201078882Upstream
ABE-0285820ymdGCDSforward10791201079146Upstream
ABE-0003433putPCDSforward10793051080813Matches
ABE-0285421repeat_regionforward10811121081145Downstream
ABE-0003441efeU_1CDSpforward10813561081466Downstream
ABE-0285091efeUpseudogeneforward10813561082185Downstream
ABE-0003443efeU_2CDSpforward10814541082185Downstream
ABE-0003448efeOCDSforward10822431083370Downstream
ABE-0003451efeBCDSforward10833761084647Downstream
ABE-0285422repeat_regionforward10846821084767Downstream
ABE-0003458phoHCDSforward10849921086056Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.