Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003574 (lpxL) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003574 showshow history
Names
lpxL waaM htrB JW1041 ECK1039 b1054
Product
lauryl-acyl carrier protein (ACP)-dependent acyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1115662 1116582 921 307
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004960 (IPR004960 Bacterial lipid A biosynthesis acyltransferase) Apr 2008
Automated Process Approved IPR011920 (IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase) Apr 2008
Automated Process Approved PF03279 (PF03279 Bacterial lipid A biosynthesis acyltransferase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009245 lipid A biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004960
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009405 (OBSOLETE) pathogenesis GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Person Uncurated GO biological process GO:0051701 biological process involved in interaction with host GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011920
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004960
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004960, IPR011920
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011920
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004960
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lpxL Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym htrB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved synonym JW1041 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym waaM Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK1039 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1054 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product lauryl-acyl carrier protein (ACP)-dependent acyltransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family PF03279 Bacterial lipid A biosynthesis acyltransferase Protein Sequence Similarity - PFAM Model Name: PF03279
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase Protein Sequence Similarity - InterPro Domain: IPR011920
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004960 Bacterial lipid A biosynthesis acyltransferase Protein Sequence Similarity - InterPro Domain: IPR004960
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 2.-.-.- Published Annotation - Database Name: EC2GO: GO:0016740
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.3.1.- Published Annotation - Swiss-Prot Accession Number: P0ACV0 Feb 2006
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.3.3 (metabolism; macromolecules (cellular constituent) biosynthesis; lipopolysaccharide; lipid A) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787292 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003574 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10464 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ACV0 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946216 Published Annotation - Entrez Gene Database ID: 946216
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0ACV0 Published Annotation - Swiss-Prot Accession Number: P0ACV0 Jan 2006
Automated Process Approved note heat shock protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009245 - lipid A biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74138.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 9.82
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem known or putative virulence factor Published Annotation - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004960
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009405 (OBSOLETE) pathogenesis GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Person Uncurated GO biological process GO:0051701 biological process involved in interaction with host GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Person Approved GO biological process GO:0009245 lipid A biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011920
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004960
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011920
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004960, IPR011920
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004960
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001827 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001586 lpxL CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000988 lpxL CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000791 lpxL CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000198 lpxL CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000937 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002564 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001603 htrB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002561 lpxL CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001882 htrB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002365 htrB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006306 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019946 lpxL CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002523 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002154 lpxL CDS
Automated Process Approved Go view Erwinia amylovora ATCC 49946 ACW-0300583 htrB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001586 htrB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002124 htrB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003676 htrB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007228 lpxL CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001057 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005424 lpxL CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000972 htrB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003324 lpxL CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008375 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008072 lpxL CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008861 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077424 lpxL CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001145 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001378 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007891 lpxL CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008353 lpxL CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001216 lpxL CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005619 htrB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005274 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010147 lpxL CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009181 lpxL CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010096 lpxL CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005364 lpxL CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006273 lpxL CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006542 lpxL CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010054 lpxL CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006481 lpxL CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007138 lpxL CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010009 lpxL CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009702 lpxL CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010246 lpxL CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025492 lpxL CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007522 lpxL CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005853 htrB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001680 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001007 lpxL CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001065 lpxL CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001695 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001354 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001306 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001261 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001144 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002075 lpxL CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131379 lpxL CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000429 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001181 htrB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002236 lpxL CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001353 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001072 htrB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004030 lpxL CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006228 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000780 CDS
Automated Process Approved Go view Pantoea agglomerans SL1-M5 ALY-0004310 CDS
Person Uncurated Go view Pantoea ananatis AJ13355 AOV-0000815 htrB pseudogene
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003369 CDS
Automated Process Approved Go view Pantoea ananatis LMG 20103 AKB-0001504 htrB CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002757 CDS
Automated Process Approved Go view Pantoea sp. At-9b AGM-0009201 CDS
Person Uncurated Go view Pantoea sp. aB AJV-0003194 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0286949 lpxL CDS
Automated Process Approved Go view Pantoea vagans C9-1 ALK-0004623 htrB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062038 htrB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001189 htrB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001661 htrB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003531 htrB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007513 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140929 htrB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003935 htrB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006208 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001929 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001309 htrB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006486 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006158 htrB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005940 htrB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008426 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005630 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008332 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008052 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008328 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004722 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005620 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008379 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001708 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001696 htrB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002389 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005799 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008149 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005310 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006502 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107511 htrB CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083479 htrB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001325 htrB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094022 htrB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008297 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008744 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008102 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003955 lpxL CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267388 htrB CDS
Person Approved Go view Shigella boydii 227 ADV-0002228 htrB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007688 lpxL CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004784 lpxL CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002641 htrB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072190 htrB CDS
Person Approved Go view Shigella flexneri 301 ABT-0087408 htrB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001148 htrB CDS
Person Approved Go view Shigella sonnei 046 ADD-0001159 lpxL CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000229 VC0213 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002941 lpxL CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001628 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004887 htrB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001401 htrB_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000024 htrB_1 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000007 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005523 htrB1 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002578 htrB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003079 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001958 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011673 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004322 lpxL CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1110662 to 1121582
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003558opgGCDSforward11093351110870Downstream
ABE-0003560opgHCDSforward11108631113406Downstream
ABE-0285424repeat_regionforward11134171113514Downstream
ABE-0003565yceKCDSforward11135791113806Downstream
ABE-0003567msyBCDScomplement11138071114181Downstream
ABE-0003572mdtGCDScomplement11142641115490Downstream
ABE-0285425repeat_regionforward11156261115652Downstream
ABE-0003574lpxLCDScomplement11156621116582Matches
ABE-0003581trhOCDSforward11168071117859Upstream
ABE-0285426repeat_regionforward11178681117888Upstream
ABE-0003583yceICDScomplement11179011118476Upstream
ABE-0003585yceJCDScomplement11184801119046Upstream
ABE-0003588yceOCDScomplement11193071119447Upstream
ABE-0003590solACDScomplement11194681120586Upstream
ABE-0003594bssSCDScomplement11207011120955Upstream
ABE-0003599dinICDScomplement11212421121487Upstream
ABE-0003607pyrCCDScomplement11215611122607Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.