Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003590 (solA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003590 showshow history
Names
solA JW1046 ECK1044 b1059
Product
N-methyltryptophan oxidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1119468 1120586 1119 373
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006076 (IPR006076 FAD dependent oxidoreductase) Apr 2008
Automated Process Approved IPR036188 (IPR036188 FAD/NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF01266 (PF01266 FAD dependent oxidoreductase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006076
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006076
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006076
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name solA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK1044 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1046 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1059 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product N-methyltryptophan oxidase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name N-methyltryptophan oxidase, FAD-binding Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name sarcosine oxidase-like protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR036188 FAD/NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036188
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006076 FAD dependent oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR006076
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01266 FAD dependent oxidoreductase Protein Sequence Similarity - PFAM Model Name: PF01266
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.5.3.- Published Annotation - Swiss-Prot Accession Number: P40874 Feb 2006
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12669 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787298 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P40874 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P40874 Published Annotation - Swiss-Prot Accession Number: P40874 Jan 2005
Automated Process Approved db xref ASAP:ABE-0003590 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:944983 Published Annotation - Entrez Gene Database ID: 944983
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note sarcosine oxidase-like protein Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74143.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006076
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006076
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006076
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0004670 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002036 solA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002139 solA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001774 solA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002220 solA CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001605 solA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002555 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001886 solA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002371 solA CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002160 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300598 solA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001593 solA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002119 solA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003680 solA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007222 solA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001061 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005418 nagC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000976 solA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003318 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008369 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008078 solA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008867 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077430 solA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001151 solA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007885 solA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008359 solA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001221 solA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005625 solA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005280 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010152 solA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009186 solA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010101 solA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005359 solA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006278 solA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006547 solA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010059 solA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010563 solA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007143 solA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010015 solA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009707 solA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010251 solA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025497 solA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007528 solA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005858 solA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001675 solA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001012 solA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001070 solA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001690 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001359 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001311 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001267 solA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175347 solA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001149 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002069 solA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131384 solA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000423 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001187 solA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002229 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001075 solA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004035 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000784 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004306 solA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000819 solA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003365 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001508 solA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002753 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009205 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003198 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286953 solA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004627 solA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006202 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001922 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001315 solA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006480 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006144 solA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005926 solA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008420 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005636 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008338 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008058 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008334 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004728 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005626 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008385 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001703 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001691 solA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002383 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005805 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008144 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005316 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006508 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107518 solA CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083474 solA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001331 solA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094037 solA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008291 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008750 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008108 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003946 CDS
Person Approved Go view Shigella boydii 227 ADV-0002221 solA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007680 solA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004778 solA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002413 solA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072195 solA CDS
Person Approved Go view Shigella flexneri 301 ABT-0087413 solA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001153 solA CDS
Person Approved Go view Shigella sonnei 046 ADD-0001165 solA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001638 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004922 solA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001411 solA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000033 solA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000012 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239699 solA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005820 solA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002351 solA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001016 solA CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123450 solA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004589 solA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007804 solA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008921 solA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008371 solA CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031432 solA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008318 solA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002465 solA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002235 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005531 solA CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002573 solA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003069 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001966 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011683 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004319 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22873mutantTn5 InsertionRequest the StrainABE-0003590solAsolA::Tn5(KAN-I-SceI) at position 1024 in Plus orientation ,+ pKD46 0Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1114468 to 1125586
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003572mdtGCDScomplement11142641115490Downstream
ABE-0285425repeat_regionforward11156261115652Downstream
ABE-0003574lpxLCDScomplement11156621116582Downstream
ABE-0003581trhOCDSforward11168071117859Downstream
ABE-0285426repeat_regionforward11178681117888Downstream
ABE-0003583yceICDScomplement11179011118476Downstream
ABE-0003585yceJCDScomplement11184801119046Downstream
ABE-0003588yceOCDScomplement11193071119447Downstream
ABE-0003590solACDScomplement11194681120586Matches
ABE-0003594bssSCDScomplement11207011120955Upstream
ABE-0003599dinICDScomplement11212421121487Upstream
ABE-0003607pyrCCDScomplement11215611122607Upstream
ABE-0003611yceBCDScomplement11227131123273Upstream
ABE-0003615grxBCDScomplement11234071124054Upstream
ABE-0003618mdtHCDScomplement11241181125326Upstream
ABE-0003622rimJCDSforward11255621126146Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.