Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003607 (pyrC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003607 showshow history
Names
pyrC JW1049 ECK1047 b1062
Product
dihydro-orotase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1121561 1122607 1047 349
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000426
EnteroFam0003607: Trusted threshold=931.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002195 (IPR002195 Dihydroorotase, conserved site) Apr 2008
Automated Process Approved IPR006680 (IPR006680 Amidohydrolase-related) Apr 2008
Automated Process Approved IPR004721 (IPR004721 Dihydroorotase homodimeric type) Apr 2008
Automated Process Approved IPR032466 (IPR032466 Metal-dependent hydrolase) Jul 2018
Automated Process Approved PF01979 (PF01979 Amidohydrolase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006221 pyrimidine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0019856 pyrimidine nucleobase biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004721
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004151 dihydroorotase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004721
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006680
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pyrC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW1049 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1047 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1062 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product dihydro-orotase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name dihydro-orotase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0003607: Trusted threshold=931.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000426
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF01979 Amidohydrolase family Protein Sequence Similarity - PFAM Model Name: PF01979
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR032466 Metal-dependent hydrolase Protein Sequence Similarity - InterPro Domain: IPR032466
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004721 Dihydroorotase homodimeric type Protein Sequence Similarity - InterPro Domain: IPR004721
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006680 Amidohydrolase-related Protein Sequence Similarity - InterPro Domain: IPR006680
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002195 Dihydroorotase, conserved site Protein Sequence Similarity - InterPro Domain: IPR002195
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 3.5.2.3 Published Annotation - Swiss-Prot Accession Number: P05020 Feb 2006
Automated Process Uncurated EC number 3.-.-.- Published Annotation - Database Name: EC2GO: GO:0016787
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.2.2 (metabolism; building block biosynthesis; nucleotide; pyrimidine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P05020 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P05020 Published Annotation - Swiss-Prot Accession Number: P05020 Jan 2005
Automated Process Approved db xref EcoGene:EG10806 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003607 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787301 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945787 Published Annotation - Entrez Gene Database ID: 945787
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Pyrimidine ribonucleotide biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006221 - pyrimidine nucleotide biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74146.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0019856 pyrimidine nucleobase biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004721
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006221 pyrimidine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004151 dihydroorotase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004721
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006680
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000426 pyrC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000578 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000407 pyrC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000577 pyrC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000835 pyrC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000338 pyrC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000929 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002555 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129604 pyrC CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104445 pyrC CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001608 pyrC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002551 pyrC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001889 pyrC CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002374 pyrC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006314 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019938 pyrC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002516 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002163 pyrC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300603 pyrC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001597 pyrC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002116 pyrC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003683 pyrC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007219 pyrC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001064 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005415 pyrC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000979 pyrC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003315 pyrC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008366 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008081 pyrC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008870 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077433 pyrC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001154 pyrC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001387 pyrC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007882 pyrC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008362 pyrC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001224 pyrC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005628 pyrC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005283 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010155 pyrC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009189 pyrC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010104 pyrC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005356 pyrC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006281 pyrC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006550 pyrC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010062 pyrC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010560 pyrC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007146 pyrC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010018 pyrC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009710 pyrC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010254 pyrC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025500 pyrC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007531 pyrC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005861 pyrC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001672 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001015 pyrC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001073 pyrC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001686 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001363 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001315 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001270 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175350 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001152 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002066 pyrC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131387 pyrC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000420 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001190 pyrC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002227 pyrC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003251 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001078 pyrC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004038 pyrC CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006233 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000788 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004302 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000822 pyrC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003361 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001512 pyrC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002749 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009209 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003202 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286957 pyrC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004631 pyrC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062046 pyrC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001171 pyrC CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003794 pyrC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003539 pyrC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007504 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140941 pyrC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004230 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006199 pyrC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001919 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001318 pyrC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006477 pyrC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006137 pyrC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005919 pyrC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008417 pyrC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005639 pyrC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008341 pyrC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008061 pyrC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008337 pyrC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004731 pyrC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005629 pyrC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008388 pyrC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001700 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001688 pyrC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002380 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005808 pyrC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008141 pyrC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005319 pyrC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006511 pyrC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107522 pyrC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083471 pyrC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001334 pyrC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094046 pyrC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008288 pyrC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008753 pyrC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008111 pyrC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003943 pyrC CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267337 pyrC CDS
Person Approved Go view Shigella boydii 227 ADV-0002218 pyrC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007677 pyrC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004775 pyrC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002407 pyrC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072198 pyrC CDS
Person Approved Go view Shigella flexneri 301 ABT-0087415 pyrC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001155 pyrC CDS
Person Approved Go view Shigella sonnei 046 ADD-0001168 pyrC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003818 VCA0925 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000175 pyrC CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002917 pyrC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001642 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004925 b1062 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001414 b1062 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000036 pyrC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000015 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239695 pyrC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004507 pyrC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002346 pyrC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001867 pyrC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120595 pyrC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004585 pyrC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004346 pyrC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002677 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009627 pyrC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008368 pyrC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031437 pyrC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007709 pyrC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002462 pyrC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002231 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008716 pyrC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005534 pyrC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002570 pyrC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003066 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001969 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011689 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004316 pyrC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1116561 to 1127607
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003574lpxLCDScomplement11156621116582Downstream
ABE-0003581trhOCDSforward11168071117859Downstream
ABE-0285426repeat_regionforward11178681117888Downstream
ABE-0003583yceICDScomplement11179011118476Downstream
ABE-0003585yceJCDScomplement11184801119046Downstream
ABE-0003588yceOCDScomplement11193071119447Downstream
ABE-0003590solACDScomplement11194681120586Downstream
ABE-0003594bssSCDScomplement11207011120955Downstream
ABE-0003599dinICDScomplement11212421121487Downstream
ABE-0003607pyrCCDScomplement11215611122607Matches
ABE-0003611yceBCDScomplement11227131123273Upstream
ABE-0003615grxBCDScomplement11234071124054Upstream
ABE-0003618mdtHCDScomplement11241181125326Upstream
ABE-0003622rimJCDSforward11255621126146Upstream
ABE-0003625yceHCDSforward11261571126804Upstream
ABE-0003627yceMCDSforward11268061127729Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.