Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003630 (murJ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003630 showshow history
Names
murJ mviN mviS yceN JW1056 ECK1054 b1069
Product
peptidoglycan lipid II flippase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1127839 1129374 1536 512
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000430
EnteroFam0003630: Trusted threshold=1329.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004268 (IPR004268 Peptidoglycan biosynthesis protein MurJ) Apr 2008
Automated Process Approved PF03023 (PF03023 Lipid II flippase MurJ) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009405 (OBSOLETE) pathogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004268
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004268
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name murJ Published Annotation - PubMed ID: 18832143
Reference: Escherichia coli K-12 MC4100 		Apr 2009
Person Approved synonym yceN Published Annotation in EcoGene - EG Number: EG13880
Reference: Escherichia coli K-12 		Jan 2007
Automated Process Approved synonym mviN Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW1056 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym mviS Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK1054 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1069 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product peptidoglycan lipid II flippase Experimental - PubMed ID: 18832143
Reference: Escherichia coli K-12 MC4100 		Apr 2009
Person Uncurated alternate product name predicted integral membrane protein Published Sequence Analysis - PubMed ID: 18708495
Reference: Escherichia coli K-12 MG1655 		Apr 2009
Automated Process Approved alternate product name probable peptidoglycan lipid II flippase required for murein synthesis Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0003630: Trusted threshold=1329.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000430
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR004268 Peptidoglycan biosynthesis protein MurJ Protein Sequence Similarity - InterPro Domain: IPR004268
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03023 Lipid II flippase MurJ Protein Sequence Similarity - PFAM Model Name: PF03023
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 5.10 (cell processes; defense/survivial) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated comment there is no direct evidence of virulence Published Annotation - PubMed ID: 18708495 Apr 2009
Automated Process Approved db xref EcoGene:EG13880 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003630 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AF16 Published Annotation - Swiss-Prot Accession Number: P0AF16 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AF16 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787309 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945487 Published Annotation - Entrez Gene Database ID: 945487
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function putative factor; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated mutant phenotype conditional expression; does not grow in absence of expression inducer; essential gene Experimental - PubMed ID: 18832143
Reference: Escherichia coli K-12 MC4100 		Apr 2009
Automated Process Approved note putative virulence factor Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74153.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009405 (OBSOLETE) pathogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004268
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004268
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000430 murJ CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001573 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000264 murJ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000267 murJ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000356 murJ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000589 murJ CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001093 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000414 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129603 mviN CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105035 mviN CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104444 mviN CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001615 mviN CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002544 mviN CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001896 murJ CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002380 murJ CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007095 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017057 murJ CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001859 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002170 mviN CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300619 mviN CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001604 mviN CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002109 mviN CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003690 mviN CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007212 mviN CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001071 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005408 mviN CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000986 mviN CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003308 mviN CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008357 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008088 mviN CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008877 MviN CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077442 murJ CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001162 mviN CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001394 mviN CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007875 mviN CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008369 mviN CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001231 yceN CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005635 mviN CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005290 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010162 mviN CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009196 mviN CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010111 mviN CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005349 mviN CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006288 mviN CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006557 mviN CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010069 mviN CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010553 mviN CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007153 mviN CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010025 mviN CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009717 mviN CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010261 mviN CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025507 yceN CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007538 murJ CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005868 mviN CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001664 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001021 yceN CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001080 yceN CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001679 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001370 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001322 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001279 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175357 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001159 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002059 mviN CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131394 yceN CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000413 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001197 mviN CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001840 mviN CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002615 mviN CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001084 mviN CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004045 mviN CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006952 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000794 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004296 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000828 mviN CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003356 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001517 mviN CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002744 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009216 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003209 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286963 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004637 mviN CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062784 yceN CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001253 mviN CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000657 mviN CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003889 yceN CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006642 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0141595 mviN CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000822 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006192 mviN CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001912 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001325 yceN CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006470 mviN CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006113 mviN CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005899 mviN CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008410 mviN CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005646 mviN CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008348 mviN CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008068 mviN CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008344 mviN CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004738 mviN CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005636 mviN CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008395 mviN CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001693 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001681 yceN CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002372 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005816 mviN CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008134 mviN CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005326 mviN CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006518 mviN CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107534 yceN CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083464 yceN CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001342 mviN CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094071 yceN CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008281 mviN CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008760 mviN CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008118 mviN CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002978 mviN CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267170 mviN CDS
Person Approved Go view Shigella boydii 227 ADV-0002211 mviN CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007669 mviN CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004768 mviN CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002398 mviN CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072205 yceN CDS
Person Approved Go view Shigella flexneri 301 ABT-0087422 yceN CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001162 mviN CDS
Person Approved Go view Shigella sonnei 046 ADD-0001175 yceN CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000739 VC0680 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000285 yceN CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003829 mviN CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000327 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006942 mviN CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002632 murJ CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000254 yceN CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003582 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238823 yceN CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006553 mviN CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001732 yceN CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004533 mviN CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001398 mviN CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122047 yceN CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005470 mviN CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006597 mviN CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003975 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008181 mviN CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005827 mviN CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031983 yceN CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005938 mviN CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001841 yceN CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001280 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007709 mviN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006017 mviN CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002108 yceN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002478 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002552 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011710 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004310 mviN CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1122839 to 1134374
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003611yceBCDScomplement11227131123273Upstream
ABE-0003615grxBCDScomplement11234071124054Upstream
ABE-0003618mdtHCDScomplement11241181125326Upstream
ABE-0003622rimJCDSforward11255621126146Upstream
ABE-0003625yceHCDSforward11261571126804Upstream
ABE-0003627yceMCDSforward11268061127729Upstream
ABE-0003630murJCDSforward11278391129374Matches
ABE-0003632flgNCDScomplement11294141129830Downstream
ABE-0003634flgMCDScomplement11298351130128Downstream
ABE-0003637flgACDScomplement11302041130863Downstream
ABE-0003641flgBCDSforward11310181131434Downstream
ABE-0003643flgCCDSforward11314381131842Downstream
ABE-0003645flgDCDSforward11318541132549Downstream
ABE-0003647flgECDSforward11325741133782Downstream
ABE-0003649flgFCDSforward11338021134557Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.