Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003696 (fabH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003696 showshow history
Names
fabH JW1077 ECK1077 b1091
Product
3-oxoacyl-[acyl-carrier-protein] synthase III
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1148759 1149712 954 318
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000450
EnteroFam0003696: Trusted threshold=874.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004655 (IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3) Apr 2008
Automated Process Approved IPR013751 (IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III) Apr 2008
Automated Process Approved IPR013747 (IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal) Apr 2008
Automated Process Approved IPR016039 (IPR016039 Thiolase-like) Jul 2018
Automated Process Approved PF08545 (PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III) Jul 2018
Automated Process Approved PF08541 (PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006633 fatty acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016039
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016039
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fabH Published Annotation - PubMed ID: 1551888
Reference: Escherichia coli K-12 		Jan 2007
Person Approved synonym ECK1077 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1077 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1091 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 3-oxoacyl-[acyl-carrier-protein] synthase III Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name 3-oxoacyl-[acyl-carrier-protein] synthase III; acetylCoA ACP transacylase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name beta-Ketoacyl-acyl carrier protein (ACP) synthase III Experimental - PubMed ID: 1551888
Reference: Escherichia coli K-12 		Jan 2007
Protein Family
Person Approved EnteroFam EnteroFam0003696: Trusted threshold=874.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000450
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013747
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Protein Sequence Similarity - PFAM Model Name: PF08541
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Protein Sequence Similarity - InterPro Domain: IPR013751
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR016039 Thiolase-like Protein Sequence Similarity - InterPro Domain: IPR016039
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Protein Sequence Similarity - PFAM Model Name: PF08545
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 Protein Sequence Similarity - InterPro Domain: IPR004655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.3.1.180 Experimental - PubMed ID: 1551888
Reference: Escherichia coli K-12 		Jan 2007
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.4 (metabolism; building block biosynthesis; fatty acid and phosphatidic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved comment specifically uses CoA thioesters rather than acyl-ACP as the primer Published Annotation - PubMed ID: 1551888
Reference: Escherichia coli K-12 		Jan 2007
Person Approved db xref UniProtKB:P0A6R0 Published Annotation - Swiss-Prot Accession Number: P0A6R0 Jan 2006
Automated Process Approved db xref GeneID:946003 Published Annotation - Entrez Gene Database ID: 946003
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1787333 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A6R0 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003696 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10277 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Fatty acid and phosphatidic acid biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note 3-oxoacyl-[acyl-carrier-protein] synthase III; acetylCoA ACP transacylase; GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74175.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016039
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006633 fatty acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016039
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000450 fabH CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000571 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001939 fabH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001439 fabH CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000570 fabH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000320 fabH CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000920 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002547 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001637 fabH CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002519 fabH CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001920 fabH CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002404 fabH CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006322 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020855 fabH CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002507 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002194 fabH CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300681 fabH CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001629 fabH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002088 fabH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003717 fabH CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001093 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005383 fabH CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001007 fabH CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003286 fabH CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008331 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077464 fabH CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001185 fabH CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001257 fabH CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005655 fabH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002214 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009217 fabH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010134 fabH CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006310 fabH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0011149 fabH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0011417 fabH CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025530 fabH CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0010264 fabH CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005891 fabH CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001643 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001043 fabH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001103 fabH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001657 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001392 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001344 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001301 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175381 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001182 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002035 fabH CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131416 fabH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000390 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001219 fabH CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002219 fabH CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003243 fabH CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001093 fabH CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004068 fabH CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006241 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000815 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004274 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000850 fabH CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003333 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001539 fabH CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002722 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009237 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003230 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286993 fabH CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004658 fabH CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062055 fabH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000987 fabH CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000454 fabH CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007496 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143350 fabH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006167 fabH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001888 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001349 fabH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006445 fabH CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006049 fabH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005838 fabH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008626 fabH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005671 fabH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008846 fabH CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008094 fabH CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008721 fabH CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004763 fabH CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005661 fabH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008419 fabH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001670 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001658 fabH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002342 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005841 fabH CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008684 fabH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005351 fabH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006544 fabH CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107578 fabH CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083441 fabH CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001368 fabH CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094129 fabH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008256 fabH CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003935 fabH CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266383 fabH-1 CDS
Person Approved Go view Shigella boydii 227 ADV-0002188 fabH CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007644 fabH CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002372 fabH CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072228 fabH CDS
Person Approved Go view Shigella flexneri 301 ABT-0087439 fabH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001182 fabH CDS
Person Approved Go view Shigella sonnei 046 ADD-0001197 fabH CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002098 VC2023 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004899 fabH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001651 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004942 fabH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001422 fabH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000044 fabH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000023 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239679 fabH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007622 fabH CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002333 fabH CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001877 fabH CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120617 fabH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004728 fabH CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005758 fabH CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007866 fabH CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008467 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031448 fabH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007697 fabH CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002451 fabH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002221 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007938 fabH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005543 fabH CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002560 fabH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003057 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001978 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011784 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004289 fabH CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB23653mutantTn5 InsertionRequest the StrainABE-0003696fabHfabH::Tn5KAN-I-SceI at position 841 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1143759 to 1154712
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003668rneCDScomplement11411821144367Upstream
ABE-0003672yceQCDSforward11445021144822Upstream
ABE-0003675rluCCDSforward11449401145899Upstream
ABE-0285428repeat_regionforward11459281146002Upstream
ABE-0003678yceFCDScomplement11460111146595Upstream
ABE-0047242sraBncRNAforward11465891146757Upstream
ABE-0003684yceDCDSforward11467941147315Upstream
ABE-0003686rpmFCDSforward11473671147540Upstream
ABE-0003692plsXCDSforward11476211148691Upstream
ABE-0003696fabHCDSforward11487591149712Matches
ABE-0003698fabDCDSforward11497281150657Downstream
ABE-0003700fabGCDSforward11506701151404Downstream
ABE-0003703acpPCDSforward11516151151851Downstream
ABE-0003705fabFCDSforward11519391153180Downstream
ABE-0003709pabCCDSforward11533001154109Downstream
ABE-0003712mltGCDSforward11541121155134Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.